Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00095 ATGGTGTTTGATTTAGGACCTGCAAGGTGTTATAGGCAAATTAAAAACAAGCCATACCCCAAGTCCCGTTTCTGTCGTGGTGTGCCCGATCCCAAGATCAGAATTTATGATGTTGGCATGAAGAAGAAAGGTGTGGATGAGTTTCCTTTCTGTGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTGTCGAGTGAGGCATTGGAAGCTGCCCGTATTGCTTGCAACAAGTACATGGCAAAGTTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGGGTGCACCCATTCCATGTTCTTAGGATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTCCAAACTGGAATGAGAGGTGCTTTTGGAAAGCCACAGGGCACTTGTGCTAGAGTGGCTATTGGGCAGGTCCTTCTTTCTGTCCGCTGCAAGGACAGCAACAGCCATCATGCTCAGGAGGCTCTTCGCCGTGCCAAGTTCAAGTTCCCTGGTCGTCAAAAGATTATTGTTAGCAGGAAATGGGGCTTCACCAAGTTTAGCCGTTCTGATTATCTCAAGTTCAAGTCAGAGAACAGAATTGTGCCAGATGGGGTTAATGCAAAGCTTCTTGGATGCCATGGACCATTGGCCAACCGTCGACCTGGAAGAGCTTTTCTGAACAGTGCTACTGCTTAA 672 0.4717 MVFDLGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLKFKSENRIVPDGVNAKLLGCHGPLANRRPGRAFLNSATA* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00095 223 CDD Ribosomal_L16_L10e 43 168 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lapu8g00095 223 SUPERFAMILY Ribosomal protein L16p/L10e 7 175 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lapu8g00095 223 Pfam Ribosomal protein L16p/L10e 14 168 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lapu8g00095 223 NCBIfam 50S ribosomal protein L16 6 176 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lapu8g00095 223 PANTHER 60S RIBOSOMAL PROTEIN L10 7 215 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lapu8g00095 223 FunFam 60S ribosomal protein L10 4 208 - -
Lapu8g00095 223 Gene3D Ribosomal protein L10e/L16 5 219 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lapu8g00095 223 ProSitePatterns Ribosomal protein L10e signature. 110 131 IPR018255 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00095 Lapu-Chr8 9493936 9496737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00095 7 222 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.648 1.51e-140 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00095 K02866 - gmx:100305619 444.506