Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00081 ATGGCTTCTGCAACTTCCTTCAACCCATTCCAAACTCTCACGACACTCTTCCGCATCTTCACCACCGCCCTTACTCTCCTCGCCCCTTTCATCCTCGGTGACGACACCGCCGCCACGTCATCACCGCCGGACCTCTCCGCAGACCACCACACCGAGCCCTTCAAGGCAAGAACCGGTGTCCTCGTCGGCGCTTTGACCACCACCTTCTCCCTTACCTTCCTCTTCCTCCTCTACATCAAGCACTGCTACGACGCCAGAACCCTCGCCGCCTCCATCGCCAACTCCCAGCCGTCGCACGTGCGCAAAAACTCCGGCGTCGACCATGCCCTTCTGGAGTCGTTACCGGTTTTTCAGTTTGGGTCGTTGAAGGGGCAGCACGGTGTCGACTGCGCCGTTTGTCTCGCCGTGTTCGAGGACTCCGAGGTTCTGAGGTTGTTGCCCAAGTGCAGGCACGCATTCCACGTGGAGTGCGTGGACGCGTGGCTCCACGCGCACTCCACGTGCCCGCTCTGTCGCTACAAGGTTGAACCCGACGACGTCGTTGTTCTCGTGGAGGAAGACGCGAAGGCGAAATCTTCGGAGGGAGAATCGCACACAGAGGGCCAAAACGACGCCGCGTTGCGAGGGGAAAATGAGAACGCTGGAACGGCGTCGTCGGACAGCGCGGAACGCGGTTTGGAGCACCGTTTTATTGGGGTCCACCAAAGGTTGAACGATTTTGAGGCGCGAGATGCGTTGTGCTTGACTTCGGAAACGCTCACGTGGGAGGCACGTGGAGAGGAAGAAAGAAGGTGGTATAGTAGTAGTAATGTTGTTGGTGAGTCCAATGCTGACCTTGAGCTCTTTGTCACCTTCGAGACCAGCGGTGTCGAGCTCCTCTATGAGATCCACCTACTCAGCACATCACAACGGTCGCGCCTTTCCTTGTGGAGAATCTCTGCAATGGAAAGACTGCACAAGAGTTGTTCCTCCACTGCCTTCCAATATAACACCAGGTACAATCGCAAGATTCAGCTGGTATGCTACACAAGTTATCTGGAGGAGCATGGGATCCACAAGATGTGA 1065 0.5662 MASATSFNPFQTLTTLFRIFTTALTLLAPFILGDDTAATSSPPDLSADHHTEPFKARTGVLVGALTTTFSLTFLFLLYIKHCYDARTLAASIANSQPSHVRKNSGVDHALLESLPVFQFGSLKGQHGVDCAVCLAVFEDSEVLRLLPKCRHAFHVECVDAWLHAHSTCPLCRYKVEPDDVVVLVEEDAKAKSSEGESHTEGQNDAALRGENENAGTASSDSAERGLEHRFIGVHQRLNDFEARDALCLTSETLTWEARGEEERRWYSSSNVVGESNADLELFVTFETSGVELLYEIHLLSTSQRSRLSLWRISAMERLHKSCSSTAFQYNTRYNRKIQLVCYTSYLEEHGIHKM* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00081 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 178 IPR013083 -
Lapu8g00081 354 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Lapu8g00081 354 SMART ring_2 130 171 IPR001841 -
Lapu8g00081 354 Pfam Ring finger domain 129 172 IPR001841 -
Lapu8g00081 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 39 300 - -
Lapu8g00081 354 CDD RING-H2_EL5-like 129 172 - -
Lapu8g00081 354 SUPERFAMILY RING/U-box 110 178 - -
Lapu8g00081 354 MobiDBLite consensus disorder prediction 188 205 - -
Lapu8g00081 354 FunFam RING-H2 finger protein ATL43 106 179 - -
Lapu8g00081 354 MobiDBLite consensus disorder prediction 188 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00081 Lapu-Chr8 9195094 9198688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00081 59 207 C3H Transcription Factor Family AT5G05810 47.305 1.32e-39 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00081 K19041 - vun:114195049 407.912