Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02652 ATGTATCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCTTCCCACTCCATGACCCAGGCCCCCACAGGCCTCACGCGCTACGGCTCCGCACCCGGCTCTCTCCTCACCAGCACCGTTGATGCGCTCATCGGAGGATCACGCCCCTCCCCCACCCCCGCCCCTTACTATTCCGGAGGAGACTCTTCCGACTCCACCTGCAAAGACCCCACACCATATCACAACCACGCCCTCGGATCCGCCTTGCTCCGTCAGAAGAGCTCTCCCGCCGGCTTCCTCTCCCATCTCGCCACCACCGCCAACGCCACCAATCACAACCACAACCACAATGTTATCATTTTAGCCGGATTCACAATCACGCGGGGTTCTCGGTTGAAGTCCCAGTTGAGCTTCACGGGTCACTGCCAAGAATCTCTCTGTGGCGCCGATAACGCTAACAATGTGGTGCTTGCCGACCATGCCACCTTCGGGATGGAGCCCTGGGACAATTCTCAGTCTCATTCTAATTCCATCGCCTTTTCCGCTCCCCCATCTAAGCGCTCCAAAAACACCACCTCCAACGATCAAGACATCCTCCACTGCCTCAATGCCTTGGAATCTCAGTTTAGTCTTCCACAGACCACTCTTGAAATGGCTACGGTTGAGAAACTTCTGCACATTCCTGAAGATTCTGTCCCTTGCAAAATCCGTGCTAAGCGAGGCTGTGCCACTCATCCCCGCAGCATTGCCGAGCGGGAGAGGAGAACCAGAATAAGTGGAAAGCTCAAGAAATTACAGGACCTTGTACCTAATATGGATAAGCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAGCATATTAAAGGTCTTCAAACACAGGTTCAGTTGCTACATTGA 882 0.5454 MYPSSSSSSSSSPSSHSMTQAPTGLTRYGSAPGSLLTSTVDALIGGSRPSPTPAPYYSGGDSSDSTCKDPTPYHNHALGSALLRQKSSPAGFLSHLATTANATNHNHNHNVIILAGFTITRGSRLKSQLSFTGHCQESLCGADNANNVVLADHATFGMEPWDNSQSHSNSIAFSAPPSKRSKNTTSNDQDILHCLNALESQFSLPQTTLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQLLH* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02652 293 Pfam Helix-loop-helix DNA-binding domain 240 286 IPR011598 GO:0046983
Lapu7g02652 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 285 IPR011598 GO:0046983
Lapu7g02652 293 Gene3D - 232 293 IPR036638 GO:0046983
Lapu7g02652 293 CDD bHLH_AtbHLH_like 240 292 IPR045239 -
Lapu7g02652 293 MobiDBLite consensus disorder prediction 1 45 - -
Lapu7g02652 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 292 - -
Lapu7g02652 293 MobiDBLite consensus disorder prediction 1 71 - -
Lapu7g02652 293 MobiDBLite consensus disorder prediction 56 70 - -
Lapu7g02652 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 292 IPR036638 GO:0046983
Lapu7g02652 293 SMART finulus 241 291 IPR011598 GO:0046983
Lapu7g02652 293 MobiDBLite consensus disorder prediction 161 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02652 Lapu-Chr7 42698138 42699920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02652 82 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 54.751 2.09e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu7g02652 HLH 4.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02652 - - vra:106771988 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02652 7 42698138 42699920 Lapu7g02652 7 42698138 42699920 ECH
Lapu1g00126 1 6173522 6176663 Lapu7g02652 7 42698138 42699920 ECH
Lapu7g00219 7 2463704 2467736 Lapu7g02652 7 42698138 42699920 ECH