Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02647 ATGAGAAGAGATGAGGTAAAGAAGATACGTACGTACCATATTACCCTAATCCTCCTTCCTTCTTCTTCTTCTCTTCTCTTCGCCCTCCGTGTTGCTGTTGTTGCTGTTGCTGCTGCAGTGCACACCCCAATATTAGGGTTAGGGTTTGAGCTCAAAGCAAGTGTCACTGGATCTGTTCTCCGTTGCCTCTGCGTAGCCATGGATCATCGCAAGAGGAGCAGGTCTGAAGCTGCCTTCAATGTCAATGGCGCCGCCAAGAAATTCAGGCCAGAAACGGACTCCTTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACTTCTGGCTGTCCATTTGGTGAAGGGTGTCATTTCCTGCATTATGTTCCTGGTGGCTTCAAAGCAGTCTCTCAGCTGATCAATGTTGGTAGCGATCCTGCTATTCCTCATGTTGGTAGAAATGCTATTCCCCCATCCTTCCCTGATGGCTCTTCTCCTCCAGTTGTTAAAACCCGATTGTGCAACAAGTTTAATACGGCGGAGGGTTGCAAATTTGGTGACAAATGCCACTTTGCCCATGGTGAGTGGGAGCTTGGCAGGCCTACGGCCCCATCATATGAAGATCCCCGTGTTATGGGACAAATGTCAAGCAGCAGGATAGGTGGACGTCTTGAGCCCCAACTTCCCCCCCACGGCGGTGCTGCTGCCAGCTTTGGAGCCTCGGCCACTGCAAAAATTAGTATCAACGCTTCACTAGCTGGAGCTGTCATTGGAAAAAGTGGTGTCAACTCGAAGCAAATTTGTCGTGTAACAGGAGCTAAACTTGCCATAAGGGATCATGACACGGATTCTAACCTCAGAAACATCGAGCTTGAAGGCAGTCTTGATCAGATCAAGCAAGCCAGTGCCATGGTACACGAACTTATTTTAAATCTTAGTTCTGCCTCTGGGCCTCCAATGAAAAGCTTTACTACACACACTTCTGCCCCGACAGGCAACTTCAAGACCAAGCTCTGCGAAAACTTTGCTAAAGGCTCCTGCACTTTTGGGGAAAGGTGTCACTTCGCACATGGAACTGATGATTTGCGCAAGACTGGAATGTGA 1098 0.4854 MRRDEVKKIRTYHITLILLPSSSSLLFALRVAVVAVAAAVHTPILGLGFELKASVTGSVLRCLCVAMDHRKRSRSEAAFNVNGAAKKFRPETDSFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQLINVGSDPAIPHVGRNAIPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDPRVMGQMSSSRIGGRLEPQLPPHGGAAASFGASATAKISINASLAGAVIGKSGVNSKQICRVTGAKLAIRDHDTDSNLRNIELEGSLDQIKQASAMVHELILNLSSASGPPMKSFTTHTSAPTGNFKTKLCENFAKGSCTFGERCHFAHGTDDLRKTGM* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02647 365 Gene3D - 329 363 - -
Lapu7g02647 365 Gene3D - 161 198 - -
Lapu7g02647 365 PANTHER CCCH ZINC FINGER/TIS11-RELATED 75 215 IPR045877 GO:0003729
Lapu7g02647 365 ProSiteProfiles Zinc finger C3H1-type profile. 331 358 IPR000571 GO:0046872
Lapu7g02647 365 Pfam RNA-binding, Nab2-type zinc finger 105 125 - -
Lapu7g02647 365 SMART c3hfinal6 331 357 IPR000571 GO:0046872
Lapu7g02647 365 SMART c3hfinal6 100 127 IPR000571 GO:0046872
Lapu7g02647 365 SMART c3hfinal6 168 193 IPR000571 GO:0046872
Lapu7g02647 365 SUPERFAMILY CCCH zinc finger 101 126 IPR036855 GO:0046872
Lapu7g02647 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 168 193 IPR000571 GO:0046872
Lapu7g02647 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 332 356 IPR000571 GO:0046872
Lapu7g02647 365 ProSiteProfiles Zinc finger C3H1-type profile. 100 128 IPR000571 GO:0046872
Lapu7g02647 365 FunFam Zinc finger CCCH domain-containing protein 161 198 - -
Lapu7g02647 365 CDD KH-I_AtC3H36_like 243 307 - -
Lapu7g02647 365 ProSiteProfiles Zinc finger C3H1-type profile. 167 194 IPR000571 GO:0046872
Lapu7g02647 365 SMART kh_6 238 308 IPR004087 GO:0003676
Lapu7g02647 365 ProSiteProfiles Type-1 KH domain profile. 239 303 - -
Lapu7g02647 365 SUPERFAMILY CCCH zinc finger 164 197 IPR036855 GO:0046872
Lapu7g02647 365 Gene3D K Homology domain, type 1 235 328 IPR036612 GO:0003723
Lapu7g02647 365 Pfam KH domain 242 304 IPR004088 GO:0003723
Lapu7g02647 365 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 231 310 IPR036612 GO:0003723
Lapu7g02647 365 FunFam Zinc finger CCCH domain-containing protein 326 362 - -
Lapu7g02647 365 SUPERFAMILY CCCH zinc finger 331 361 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02647 Lapu-Chr7 42642020 42647600 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu7g02647 KH_1 4.4e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02647 - - gmx:100818781 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02647 7 42642020 42647600 Lapu7g02647 7 42642020 42647600 ECH