Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02612 ATGGCAGCATCTTCAGCAGAATCTTCGGTCATTGGAGTGATAGATGGAAAGTTTGAAAGTGGGTACATAGTTACTGTGACGATGGGTTCAGAGACACTGAAAGGCATACTTTATGAAGTGCCAGCATCCCATCACAGTGTCTCTGCTTCACTGGGTGTCCATCATCCACCACACAGTAAGAAATCAGAGATGAAGAAGAGAGTTCCTGTTCATCCAAAGCATAGCAGAAGTGGGTACAATTTCTTCTTTGCTGAACAACATGCAACACTCAAGGCACTTCACCAAGGAAAGGAGGGAGAGATTCCTAGGATGATCGGTGAACTCTGGTCAAAGTTAAAAGTATCCCAAAAGATGATTTATCAAGAGATGGCTGTGAAGGATAAGGAAAGGTACATGCTAGAAATGGAAGATTATTTGGAGAAATTGAAAATGGGTCCAGTTATCACTGATGCAATGCCACTTCGACAATGGCCTCCTAAACTGGACACTGATATGTTGGATGTTGACATGAAATTGGATGAAGTTGAGACAAACAAAGAAAGTTCAAGTGAAAAAGACTTTGAAGATTATAATAAAGCTGCAGATAGAGATTTTGATATGAATGCAATGCCTCATTTAGGAATGGACATTGAAACAAACTATTTGGGTTCAAAAGAGAAGTCACATGAAGAGGGTTTATGA 681 0.4009 MAASSAESSVIGVIDGKFESGYIVTVTMGSETLKGILYEVPASHHSVSASLGVHHPPHSKKSEMKKRVPVHPKHSRSGYNFFFAEQHATLKALHQGKEGEIPRMIGELWSKLKVSQKMIYQEMAVKDKERYMLEMEDYLEKLKMGPVITDAMPLRQWPPKLDTDMLDVDMKLDEVETNKESSSEKDFEDYNKAADRDFDMNAMPHLGMDIETNYLGSKEKSHEEGL* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02612 226 CDD HMG-box_AtHMGB9-like 72 138 - -
Lapu7g02612 226 MobiDBLite consensus disorder prediction 48 71 - -
Lapu7g02612 226 SUPERFAMILY HMG-box 57 143 IPR036910 -
Lapu7g02612 226 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 183 - -
Lapu7g02612 226 Gene3D High mobility group box domain 57 146 IPR036910 -
Lapu7g02612 226 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 72 139 IPR009071 -
Lapu7g02612 226 SMART hmgende2 71 140 IPR009071 -
Lapu7g02612 226 Pfam HMG (high mobility group) box 72 138 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02612 Lapu-Chr7 42333893 42334796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02612 1 172 ARID Transcription Factor Family AT1G04880 48.718 2.53e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lapu7g02612 HMG_box 5.8e-13 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02612 - - vra:106770743 307.375