Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02601 ATGCCATTTCGAGCTCGCACTGCAACTGCAAGTCTGCGGTGGTCTCTTCATTGTCTTCATCTTAGCTTCCATTCTTTGGCTCAGTCAAAACCTCAGGAGTTTTTGCCATGGTTGGAGCGGAAAGCTGCTTCTACAATTTCCTCCTCACTTTCCATCGGGAAATCTTCGTATGGAAGGTCTCTGTTTGCTTCCAAGACTATACAAACTGGAGATTGCATTTTAAAGGTTCCTTACAGAGTGCAAATAACTGCTGATAATCTCCCTCCTGAAATCAAATATTTGATTGGTGAGGAAGTTGGAAATATTGCGAAACTTGCTATTGTTATTCTCACTGAGAAGAAATTGGGTCAGGGCTCCGAATGGTATCCTTATATCAGCTGTCTTCCACAGCAGGGGGAGCTGCACAACACGGTATTTTGGAATGAAAGTGAGTTGGAGATGATTCGTCCAAGTTCAGTTTATCAGGAAACTATTGACCATAAGTCTATAATTGAAAAGGACTTTTTGACAATCAAGCGTGTTTTTGAATCATTCCATCTAAGTTTTGGAGATTTTACTTTCACGGACTTCATGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAAGGGTTTAGCACTGATTCCATTTGCAGATTTCTTAAACCATGATGGAGTTTCAGAAGCAATTGTAATGAGTGATGATGACAAACAATGCTCAGAAATTATTGCTGATCGTGACTATGCCCCCGGTGAACAGGTCCTAATAAGATATGGAAAGTTTTCAAATGCTACACTGGTTCTGGACTTTGGTTTTACAATTCCATACAACATTTACGATCAGGTTCAGATCCAGTTTGATGTACCTAAGCATGATCCTTTGCATGACATGAAGTTGGAACTCTTGCATAGATACGTTGTACCTCGTCCAGAAGATATGAAGGGCTTGACATATCCCGTGAATACCTTCAGTATCAAGGAGGTGAAATCGGATAGAGGAAAAGGGAAGGGTCTTCCACAGTCACTTCGTGCGCTTGCTCGTGTTCTTTCTTGTACCACATCTCAGGAACTTGACGGTTTGGTCGAGGAAGCTGCTCAAAATGATGGCAGGCTGGCTAGGCGCCCTTTAAAAGATATCAGCAAAGAGATACAAGCACACTTGATGTTGTTATCGGTATTCATCCAATTAATTGAGGAGCGCAATGCGACTATTATGTCACTGGATTCTTCCTCTCCCCCTTCCTTGTGTGAAAGACTTTCAGTTAGAAGATTAATGGCTCAAGATCTCCTACATGGTGAGCTTCGCATTCTCAAGTCTGCTTCTGCCTGGCTGGAGAACTACTGTTTTTTCTTGACTTGA 1347 0.4232 MPFRARTATASLRWSLHCLHLSFHSLAQSKPQEFLPWLERKAASTISSSLSIGKSSYGRSLFASKTIQTGDCILKVPYRVQITADNLPPEIKYLIGEEVGNIAKLAIVILTEKKLGQGSEWYPYISCLPQQGELHNTVFWNESELEMIRPSSVYQETIDHKSIIEKDFLTIKRVFESFHLSFGDFTFTDFMHACTLVGSRAWGSTKGLALIPFADFLNHDGVSEAIVMSDDDKQCSEIIADRDYAPGEQVLIRYGKFSNATLVLDFGFTIPYNIYDQVQIQFDVPKHDPLHDMKLELLHRYVVPRPEDMKGLTYPVNTFSIKEVKSDRGKGKGLPQSLRALARVLSCTTSQELDGLVEEAAQNDGRLARRPLKDISKEIQAHLMLLSVFIQLIEERNATIMSLDSSSPPSLCERLSVRRLMAQDLLHGELRILKSASAWLENYCFFLT* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02601 448 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 30 393 - -
Lapu7g02601 448 SUPERFAMILY SET domain 30 273 IPR046341 -
Lapu7g02601 448 FunFam Predicted protein 271 445 - -
Lapu7g02601 448 Pfam SET domain 58 255 IPR001214 GO:0005515
Lapu7g02601 448 Pfam Rubisco LSMT substrate-binding 286 433 IPR015353 -
Lapu7g02601 448 ProSiteProfiles SET domain profile. 48 255 IPR001214 GO:0005515
Lapu7g02601 448 Gene3D - 271 443 IPR036464 -
Lapu7g02601 448 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 27 268 - -
Lapu7g02601 448 Gene3D set domain protein methyltransferase, domain 1 27 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02601 Lapu-Chr7 42200169 42207516 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lapu7g02601 SET 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02601 K19199 - gmx:100818002 721.85