Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02586 ATGGCGGGGATTCAGATGCTACCGTACGGCGACGTCGATTCCAGTTTGAGGACTATGGCCGGCCGCGCCGAGGGCTTCGGCCGCCACGCCATCGGCGGCCTCCACGGTTCTCTGTATCTCGTCACCACTCTCGCAGATGATGGTCCTGGGTCCCTTCGCGAAGGATGTCGTAGGATGGAACCTTTGTGGATTGTTTTTGAGGTTTCTGGTACGATTCATCTGTCGTCGTACTTGAGTGTGTCGTCGTATAAGACAATAGATGGGAGAGGGCAGAGGGTGAAATTGACTGGGAAGGGTTTGAGGCTGAAGGAATGTGAGCACATCATCGTGTGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTTGATGGCATTCAAATCAAACCAAATTCTAGGCATATATGGATCGATCGATGCACCCTTCGTGATTACGACGATGGCCTTATAGACATCACAAGACAAAGCACCGATATCACTGTATCTAGGTGTTGCTTTGGGCAGCATGACAAGACCATGCTCATTGGAGCTGACCCGACTCACGTTGGTGATAGATGCATCCGGGTGACCATTCACCACTGTTTCTTTGATGGAACACGGCAAAGACAACCACGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGGGTATATGCTGTTTGTGCTAGTGTGGAATCTCAGATATACTCTCAATGTAACATATATGAAGCGGGGACTAAGAAAAAGACTTTTGAATTTTATACTGAGAAGGCGGCAGATAAGGAAGAGCAAAAGTCTGGCTTCATAGTATCTGAAGGAGACATGTTTTTGAATGGTGCTCAGCCATGCTTGCTTACAGAAAACAGAGAAGTGGCCATGTTCCATCCTAGCGAATATTACCCAACATGGACAATGGAAGCAGCTGCGCATTCTCTGAGAGAGGTCCTCCAATTGTGTACAGGTTGGCAATCCATTTGTAGGCCAGTAGATCGTATGGTCCTTAATTAA 1005 0.4766 MAGIQMLPYGDVDSSLRTMAGRAEGFGRHAIGGLHGSLYLVTTLADDGPGSLREGCRRMEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRVKLTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCTLRDYDDGLIDITRQSTDITVSRCCFGQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGVYAVCASVESQIYSQCNIYEAGTKKKTFEFYTEKAADKEEQKSGFIVSEGDMFLNGAQPCLLTENREVAMFHPSEYYPTWTMEAAAHSLREVLQLCTGWQSICRPVDRMVLN* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02586 334 Pfam Pectate lyase 78 240 IPR002022 -
Lapu7g02586 334 PRINTS Pollen allergen Amb family signature 22 39 IPR018082 -
Lapu7g02586 334 PRINTS Pollen allergen Amb family signature 202 221 IPR018082 -
Lapu7g02586 334 PRINTS Pollen allergen Amb family signature 224 243 IPR018082 -
Lapu7g02586 334 PANTHER PECTATE LYASE 18-RELATED 12 286 IPR045032 GO:0030570
Lapu7g02586 334 SMART amb_all 69 247 IPR002022 -
Lapu7g02586 334 Gene3D - 9 316 IPR012334 -
Lapu7g02586 334 SUPERFAMILY Pectin lyase-like 20 282 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02586 Lapu-Chr7 42078656 42081044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02586 44 332 Polysaccharide Lyase AT3G55140 79.931 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02586 K01728 - gmx:100802068 655.21