Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02570 ATGGTTCTATCAAACAAGAAACTGAAGCTTAAGCTCAGAGCTGAATTGGCCCAACAACAGAATCATACCAACGAAGTCCCTTCATCTTCGAACTCTCTCAAAACTCTCTTGGACGCTGCCACCCCCACACCCAGATTGTCCAAGCGAGACAAACGCCGAAAGCTTCGATCTTCCGAACACCCTCCAAAAGCCAACAAGGAAACTGAAACAGAGGGTTCGGCCAATAAGAAAAACAAGAAGAGAAAGAGGAAGGTAGAGGACGATGGCGTGTCAAATGGAGTTCCCGACAGCACACCACAGAACAACAGCACGAAGAAGAAGAAGAAAAAGCAGAAGAAGAACAAGAAGAAAAAACCCAAAACTTTGGAAGAAAATGGTTCTAACGGTGGAGGGGCAATGCCAGAGGCTACAGAGTTAACCAAGACCAACACAACTACGAGTCAAGACAATGGTGATGTCCCTACAAAAGTTTATGTTGGAGGAATTCCTTATTATTCAACCGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACGGAAGTTGATTGCATGTATTTTCCTGAAACTGGCAAGTTTAGAGGGATTGCCATTATTAGTTTTAAGACTGAAGCAGCAGCTAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAACAACGCGAGCCAATAAAGTATCGGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGAGTATATGTTGGGAATTTGTCATGGGATATGACAGAGGAAGAAATGAGGAAATTCTTCAATAACTGTGAGATAGCGTCCATACGATTTGGTATGGATAAGGAGACAGGAGAGTTTCGAGGGTATGCCCATGTGGATTTCAGTGATAGTCAGTCACTGAAAACAGCACTTACATTGGACCAAAATGTTTTGTTTGGGAGACCTGTCAGGATAAGTTGTGCAGTTCCTTTGAAGAAAAAACCAGGAACTCATACAAGCTCCACAGTTGATGGAGCTGATGTTGATAAATCAACTTCCTCAGGAAGTGGCAAGATGAATGGAGCTGATGGTGATAAATCAAGTTCCACTGTAAGTGGCAAGATGAAGAGGAGGACGTGCTATGAATGTGGTGAGAAAGGACATGGTTTTTCGGAATGCCCGAAGAAACAAACAGGTGCTGCAACTACAACCTAA 1203 0.4289 MVLSNKKLKLKLRAELAQQQNHTNEVPSSSNSLKTLLDAATPTPRLSKRDKRRKLRSSEHPPKANKETETEGSANKKNKKRKRKVEDDGVSNGVPDSTPQNNSTKKKKKKQKKNKKKKPKTLEENGSNGGGAMPEATELTKTNTTTSQDNGDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMYFPETGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKTTRANKVSDFAPEILEGYNRVYVGNLSWDMTEEEMRKFFNNCEIASIRFGMDKETGEFRGYAHVDFSDSQSLKTALTLDQNVLFGRPVRISCAVPLKKKPGTHTSSTVDGADVDKSTSSGSGKMNGADGDKSSSTVSGKMKRRTCYECGEKGHGFSECPKKQTGAATTT* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02570 400 MobiDBLite consensus disorder prediction 330 400 - -
Lapu7g02570 400 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 49 229 - -
Lapu7g02570 400 Coils Coil 5 25 - -
Lapu7g02570 400 SUPERFAMILY RNA-binding domain, RBD 244 331 IPR035979 GO:0003676
Lapu7g02570 400 SUPERFAMILY RNA-binding domain, RBD 145 236 IPR035979 GO:0003676
Lapu7g02570 400 ProSiteProfiles Zinc finger CCHC-type profile. 376 391 IPR001878 GO:0003676|GO:0008270
Lapu7g02570 400 Gene3D - 246 333 IPR012677 -
Lapu7g02570 400 Gene3D - 38 240 IPR012677 -
Lapu7g02570 400 MobiDBLite consensus disorder prediction 60 90 - -
Lapu7g02570 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 326 IPR000504 GO:0003723
Lapu7g02570 400 MobiDBLite consensus disorder prediction 14 136 - -
Lapu7g02570 400 MobiDBLite consensus disorder prediction 331 371 - -
Lapu7g02570 400 CDD RRM1_PHIP1 157 228 IPR034361 -
Lapu7g02570 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 319 IPR000504 GO:0003723
Lapu7g02570 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 223 IPR000504 GO:0003723
Lapu7g02570 400 MobiDBLite consensus disorder prediction 16 38 - -
Lapu7g02570 400 Gene3D - 348 400 - -
Lapu7g02570 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Lapu7g02570 400 MobiDBLite consensus disorder prediction 374 388 - -
Lapu7g02570 400 SMART rrm1_1 251 322 IPR000504 GO:0003723
Lapu7g02570 400 SMART rrm1_1 156 228 IPR000504 GO:0003723
Lapu7g02570 400 SUPERFAMILY Retrovirus zinc finger-like domains 368 395 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02570 Lapu-Chr7 41974230 41976644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02570 155 324 Eukaryotic Initiation Factors Gene Family AT3G16380 29.834 1.65e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02570 - - gmx:100814693 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02570 7 41974230 41976644 Lapu7g02570 7 41974230 41976644 ECH