Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02567 ATGATGAAGAGAGAAAGAGAAGTTGATAGCATAACCATGGCCAACTACTTGATGCTGCTTTCTGGAGGAGGTGAATTTGAGAACACAAACTACTTGAAGTACTCTTCAAACCACCGTGTGTTTGAGTGCAAGACGTGTAACAGGCAGTTTCCATCGTTTCAAGCCTTGGGAGGGCACCGTGCGAGTCACAAGAAGCCTAGGCTGATGACGGGAGAGGGTGAGCATAACCAAGTTCTTCATGGTTCACCACCAAAGCCTAAGACACATGAGTGTTCCATTTGTGGTTTGGAGTTTGCGATTGGGCAAGCTTTGGGAGGACACATGAGACGCCATAGAACCTCATCATCAAACGGAAACATGCACAATACTACTGCTTCTGCTAATTCTTTGGTGAGTGGAAGCACTGTTGATAATACTTCACCAAACATGAGCCACAAAGCTACCAACAAGACAGTTCTGTTTCCTGATTTGAATTTGACGCCATTAGAGAATGATTTGGAGTTTTTGAAGATCAGACAAGCAACTCCTTTGGTTCACTGCTTCAATTGA 549 0.4426 MMKREREVDSITMANYLMLLSGGGEFENTNYLKYSSNHRVFECKTCNRQFPSFQALGGHRASHKKPRLMTGEGEHNQVLHGSPPKPKTHECSICGLEFAIGQALGGHMRRHRTSSSNGNMHNTTASANSLVSGSTVDNTSPNMSHKATNKTVLFPDLNLTPLENDLEFLKIRQATPLVHCFN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02567 182 PANTHER ZINC FINGER PROTEIN ZAT5 7 165 - -
Lapu7g02567 182 Pfam C2H2-type zinc finger 89 113 - -
Lapu7g02567 182 Pfam C2H2-type zinc finger 40 66 - -
Lapu7g02567 182 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Lapu7g02567 182 SMART c2h2final6 41 63 IPR013087 -
Lapu7g02567 182 SMART c2h2final6 89 111 IPR013087 -
Lapu7g02567 182 SUPERFAMILY beta-beta-alpha zinc fingers 39 111 IPR036236 -
Lapu7g02567 182 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Lapu7g02567 182 Gene3D Classic Zinc Finger 39 111 - -
Lapu7g02567 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Lapu7g02567 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02567 Lapu-Chr7 41952179 41952727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02567 2 178 C2H2 Transcription Factor Family AT2G37430 40.642 1.25e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g02567 zf-C2H2_6 1.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02567 - - gmx:100816598 245.358