Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02558 ATGGATAGGTGTATATATATTAGTTCGTCAGATGATGACTTGGAGGAAATAGATGATCGAAAGAGAACTCTTCCGCGGTGGGCTACAAATACTGAAAGGAGTTCAGATAATGGTAGGAAATATAATTCTTCAAGAGGCGCTAATAGTTCAAATCTAAGTTCTTCTAATGTTTATAATCATTCACAAATCAAACCTCATACACCACCCATGTCCAGTGCCAATGCACTGAACCACAGAATTGCACAAAGAGATGAACCTTCCTACCATGCTCAGAATGGAAACACAAGTCAGCAACAAACAGTTAATTCCCGAATTTCAAATTCTCATGGTGCAGATTATGAGAAAATGTCATCTCATCAAGCTTTCAAGAGGACCATTCCTTCATCTCTTCAGCCTTCTGCAACAAGGGCTCTTCCTTCTTCTTCATTTGCATCAGACATCAGATTAAGCAACTTCAAAGATAACGCAGGCAATAGTCATCTTCATGATGCATACAAGAATCGTCACCAGGTAGTAGGGCCTAGCACATCCGGTGACAGGGGCTATATTCGTGACAAATTTGGCAGGGGCTATGATGAAGAGAAATTTTTGTATCAAAATGGTGGGAACAGGATTCTTCCACCATCTTTGGTGCTTGGAAAGACCATAACTCCACACTTCCCTATTTCTAGTGAATCAGCATATCGTTCTGGAACAGGTGATGAAAGGTCTGCCGAAAATGACGAGAGACTAATTTATGAGGCAGCATTACAGGATATCAGTCAACCTAAAACAGAATATGACTTACCTGCTGGTTTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCTTTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAGACAATATCAATGATTTCCCTCATTCTGGCACTGAGGTCATTACAGTCAAAATCAAAAACAGATGATACACGCAATCATAAAGCTGAAGCTTTGAATTTGGATGACGATGACGACAATGGTGGTATAGATGTGGAAAAACATAAAAATAGTGAGGAATCTGATGATTTATTACCTAATAGAGAACCTAGCAGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCTGGTACACTAGTTGTCTGCCCTGCTAGTGTTCTTCGACAGTGGGCCAGAGAACTTGATGAAAAGGTTGGAGATGAAAAGCTTTCTGTTTTAGTTTATCATGGGGGCAGTAGGACAAAGGATCATTTAGAACTTGCAAAATTTGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAGGTTCCTAAGCAACCATTAGTTGAGGAGGATGATATCGAGGACAAAAATGGGGAAAGATTTGGGTTATCCTCGGAGTTTTCTGTTAGTAAAAAGAGGAAAAAACCATTTAACGGAAATAAGAAGAGTAAAAAAGGTAGAAAAGGAATTGACAGTTCTATTGAATATGGTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCTCAAACAATAAAGAATCATAGAACTCAGGTTGCTAGAGCTTGCTGCAGCCTTAGAGCTAAAAGAAGATGGTGCTTATCTGGAACGCCTATTCAAAATACCATTGATGATTTGTATAGCTACTTTAGATTCCTAAAGTATGATCCTTATGCTGTATATAAATCATTCTACAACACCATAAAGGTTCCAATATCCCGAAATTCCATTCATGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCGATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCAATTTGCCTCCTAAAACAATTGAGCTCAGTAAAGTGGATTTCTCCATTGAGGAGCGGGCCTTCTATACCAAGTTGGAATCAGACTCACGTACTCAATTTAAGGCATATGCTGCTGCTGGGACCGTGAACCAAAACTATGCTAATATTCTTTTAATGCTCTTGCGTCTCCGACAGGCTTGTGATCACCCACGTCTTGTTAAAGATATTGATTCTGATCCTATTGGGAAGGATTCTGTTGAAATGGCAAAAACACTTCCAAGGGAAATGCAAATTAGTCTGTTTAATTGTTTGGAATCAACCTTTGCTATCTGTCATGTTTGCAATGATCCCCCTGATCGCCCTGTTATTACGATGTGCGGCCATGTCTTCTGTTATGAATGTGTACATGACTATTTGACTGGTGATGATAATACGTGCCCTGCTGTTAATTGTAAAGAAGTAATCTGTGATGATCTTGTTTTCTCTAAAGTTACCTTGAGGAGTTGTATCTCTGATGATGGTGGCACTTCTAGTTCTGCGAATTCCCATCTTTGTGATTATTCGCTGGTGCAGCTGCCTGAATACATTTCATCTAAGATCAAAGCCGTTCTTGAGGTTTTGCAGTCAAATTGTAACGTGAAAATATCTAGTTCTGACTTGCCGAACACTGGATGTTGTAGAAACTCACCCTCTTCTGATATTTTATATGTTGAAGACTGTGATTCAGATGTTAGGGTTACAAAACACACAAGAAAGTATTCAGAGTCCACTAGTGAAGGACCGATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGATTTAGTTGGGACGGCATTGTGCCAATTTGGTATACCGTACAGGAGACTTGATGGTAGGATGACTCTGGGTGCAAGGGACAAAGCTGTCAAGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCGCTAAAGGCAGGAAACCTTGGTTTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCTGTTACTGTGACACGGATTACTATAAAAGATACCGTCGAAGATAGGATACTGGCTCTTCAGGATGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGGGAAGACAATGCTGGCGGGTCTGGAACTCGCCTTACAGTGGATGATCTGAAATATCTCTTCATGGTCTAG 3063 0.4022 MDRCIYISSSDDDLEEIDDRKRTLPRWATNTERSSDNGRKYNSSRGANSSNLSSSNVYNHSQIKPHTPPMSSANALNHRIAQRDEPSYHAQNGNTSQQQTVNSRISNSHGADYEKMSSHQAFKRTIPSSLQPSATRALPSSSFASDIRLSNFKDNAGNSHLHDAYKNRHQVVGPSTSGDRGYIRDKFGRGYDEEKFLYQNGGNRILPPSLVLGKTITPHFPISSESAYRSGTGDERSAENDERLIYEAALQDISQPKTEYDLPAGLLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMISLILALRSLQSKSKTDDTRNHKAEALNLDDDDDNGGIDVEKHKNSEESDDLLPNREPSSSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLVYHGGSRTKDHLELAKFDVVLTTYSIVTNEVPKQPLVEEDDIEDKNGERFGLSSEFSVSKKRKKPFNGNKKSKKGRKGIDSSIEYGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIHGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKTIELSKVDFSIEERAFYTKLESDSRTQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDIDSDPIGKDSVEMAKTLPREMQISLFNCLESTFAICHVCNDPPDRPVITMCGHVFCYECVHDYLTGDDNTCPAVNCKEVICDDLVFSKVTLRSCISDDGGTSSSANSHLCDYSLVQLPEYISSKIKAVLEVLQSNCNVKISSSDLPNTGCCRNSPSSDILYVEDCDSDVRVTKHTRKYSESTSEGPIKAIVFSQWTSMLDLVGTALCQFGIPYRRLDGRMTLGARDKAVKDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQDEKRKMVASAFGEDNAGGSGTRLTVDDLKYLFMV* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02558 1020 MobiDBLite consensus disorder prediction 323 381 - -
Lapu7g02558 1020 CDD DEXDc_SHPRH-like 271 599 - -
Lapu7g02558 1020 SUPERFAMILY RING/U-box 713 772 - -
Lapu7g02558 1020 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 849 1015 IPR001650 -
Lapu7g02558 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 599 IPR027417 -
Lapu7g02558 1020 Gene3D - 614 1019 IPR027417 -
Lapu7g02558 1020 MobiDBLite consensus disorder prediction 472 491 - -
Lapu7g02558 1020 CDD SF2_C_SNF 863 971 - -
Lapu7g02558 1020 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 561 IPR014001 -
Lapu7g02558 1020 Pfam SNF2-related domain 274 677 IPR000330 GO:0005524|GO:0140658
Lapu7g02558 1020 SMART ring_2 715 753 IPR001841 -
Lapu7g02558 1020 Pfam Helicase conserved C-terminal domain 865 962 IPR001650 -
Lapu7g02558 1020 Gene3D - 472 612 IPR038718 -
Lapu7g02558 1020 Gene3D - 245 331 IPR038718 -
Lapu7g02558 1020 SMART helicmild6 879 962 IPR001650 -
Lapu7g02558 1020 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 480 611 - -
Lapu7g02558 1020 MobiDBLite consensus disorder prediction 28 73 - -
Lapu7g02558 1020 ProSitePatterns Zinc finger RING-type signature. 730 739 IPR017907 -
Lapu7g02558 1020 SMART ultradead3 267 578 IPR014001 -
Lapu7g02558 1020 MobiDBLite consensus disorder prediction 87 111 - -
Lapu7g02558 1020 Gene3D - 368 453 IPR038718 -
Lapu7g02558 1020 MobiDBLite consensus disorder prediction 323 363 - -
Lapu7g02558 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 1019 IPR027417 -
Lapu7g02558 1020 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 795 IPR013083 -
Lapu7g02558 1020 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 47 1019 - -
Lapu7g02558 1020 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 364 451 - -
Lapu7g02558 1020 ProSiteProfiles Zinc finger RING-type profile. 715 754 IPR001841 -
Lapu7g02558 1020 Pfam Zinc finger, C3HC4 type (RING finger) 715 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02558 Lapu-Chr7 41870115 41884744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02558 1 920 RAD5 or RAD16-like Gene Family AT1G50410 55.936 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu7g02558 SNF2_N 1e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02558 - - gmx:100795142 1733.77