Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02556 ATGGCATCTCAAACGAGGAAGAGAGTTGACGCCGTTGATTCTCGCTCTGCTTCCGTTCTCGTTCGCGCTAAAGATGGCAGTGCTTTTGCGCGATGTGACGATTGCAAGAAGAATGTGCCGGTGGCACTCATCGACATGCACAATTGCAGCCTTGAGGCTAAAATTAAAATGAACCTTGATGCTCAGGTTGTGGAACAGGCTGCCGAAGCTAAGAAGCTAGAGAGGAAGAAACCCAAGTCTAAAGAGCCAAAGGCGAAAAGGGCTAAGGTAGAGAAGGGGAAGAAAATCAAGGATCCTAACATGCCTAAGCGTCCTGCCACGGCCTTCTTTGTCTTTTTGGATGACTTTAGAAAAACGTTCAAGGAAGCCAATCCTGATTCAAAGGATGTGAAAAGGGTTGGCAAGGAGGCTGGTGAGAAATGGAAGTCTATGACTGACGAAGAGAAGAAGCCTTATTTGGATAAAGTTGCTGAACTAAAGGCAGAATATGAGAAGGCTATGGCAAACTATAGAGCTGGTGAAGCTGAAGAAGAGCAAGCTGGATCTGATAAGGAAACTGCAGCAAAAGAAGTGGAAGAGGAGTTAACCGACGAAGAGTGA 600 0.4617 MASQTRKRVDAVDSRSASVLVRAKDGSAFARCDDCKKNVPVALIDMHNCSLEAKIKMNLDAQVVEQAAEAKKLERKKPKSKEPKAKRAKVEKGKKIKDPNMPKRPATAFFVFLDDFRKTFKEANPDSKDVKRVGKEAGEKWKSMTDEEKKPYLDKVAELKAEYEKAMANYRAGEAEEEQAGSDKETAAKEVEEELTDEE* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02556 199 CDD HMG-box_AtHMGB1-like 103 163 - -
Lapu7g02556 199 MobiDBLite consensus disorder prediction 170 191 - -
Lapu7g02556 199 Gene3D High mobility group box domain 97 173 IPR036910 -
Lapu7g02556 199 Coils Coil 156 176 - -
Lapu7g02556 199 SUPERFAMILY HMG-box 93 176 IPR036910 -
Lapu7g02556 199 MobiDBLite consensus disorder prediction 170 199 - -
Lapu7g02556 199 MobiDBLite consensus disorder prediction 66 102 - -
Lapu7g02556 199 Coils Coil 56 76 - -
Lapu7g02556 199 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 193 - -
Lapu7g02556 199 SMART hmgende2 101 172 IPR009071 -
Lapu7g02556 199 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Lapu7g02556 199 MobiDBLite consensus disorder prediction 84 101 - -
Lapu7g02556 199 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02556 Lapu-Chr7 41858926 41863199 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lapu7g02556 HMG_box 1.2e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02556 K25507 - gmx:100810345 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02556 7 41858926 41863199 Lapu7g02556 7 41858926 41863199 ECH