Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02543 ATGTCGGAAGCACCACCGTCTCAAGCACCGCCTCCAGCCGCCGACGCGCCTCCGCCGCCATATTGGTGCTACCACTGCGACAAGCGCGTTTCCGTCGAAACGCTCGCCAATCTCCCCGACGTTGTCTGCGGTGAGTGCAAAAACGGCTTCGTCGAATCCATCCCCACGCCGGCGCGCTCGCGTAGCCCCTCCGCCTCCTCCGATGACCCCTACTTTGGTTCTCAGTTCCTCCAGGTGCTTCGCCTAATCGCGCAATCGGCGCGTGACGACGACGCGTCGCCTCCGCCGCCGCCGAACCGTTCTCCGGAGAACGATTTCCTTAGGATCGAGCTCGGCGGCTGGGACAACGACGAGGAGAACGAAAACGAGAACGACGACGATAACGGCGACGAGGAGTTCGAGGAGCACGAGGAGGCGGAGGATCGCTCCGGCAACGAGGATCCTCACGGAGACGACGAGGATCTGAGAAGGAGAAGGCGCGAGCTGCTTCGGCTTCGGATTAGGGATTTGGCAACGCGCACGAGGAGCATGCGGAACCGGATCTTGGATTGGGCCGAGATTCTGATGGGTCTCGAGGACAATTCCATTGAGTTTCGCCTCCGGGTGCCGGAATCCGACCGCTACGTCGGGAATCCGGAGGATTACGTCGACGCGGCGGAGTACGAGGCGTTGCTGCAGACGCTGGCGGAGACCGACAGCGGAGGCAGGAGAGGAGCGCCGCCGGCGTCGAAGTCGGTGGTGGAAGCCTTGCCGACGGTGAAGATTGCGTCGGAGAGCGAAACTGTGGCGTGCGCTATATGTAAGGATTTGCTCGGTGTTGGAGACGCCGCGAAGAGGTTACCGTGCGGGCATCAGTATCATGGAGATTGCATTGTTCCTTGGTTGAGCTCTAGAAATTCTTGCCCTGTTTGCAGGTTTGAGCTTCCGACGGATGATAAGGAGTATGAGGAAGAGAGAGTGGTCAACGCTGCTTCCTCGAATTCCAGCGGAGCTTCGAGTTCCGGTGGAGGTGGAAGGACCATTGTTTGA 1029 0.6025 MSEAPPSQAPPPAADAPPPPYWCYHCDKRVSVETLANLPDVVCGECKNGFVESIPTPARSRSPSASSDDPYFGSQFLQVLRLIAQSARDDDASPPPPPNRSPENDFLRIELGGWDNDEENENENDDDNGDEEFEEHEEAEDRSGNEDPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLRVPESDRYVGNPEDYVDAAEYEALLQTLAETDSGGRRGAPPASKSVVEALPTVKIASESETVACAICKDLLGVGDAAKRLPCGHQYHGDCIVPWLSSRNSCPVCRFELPTDDKEYEEERVVNAASSNSSGASSSGGGGRTIV* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02543 342 MobiDBLite consensus disorder prediction 116 141 - -
Lapu7g02543 342 ProSiteProfiles Zinc finger RING-type profile. 264 305 IPR001841 -
Lapu7g02543 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 124 309 - -
Lapu7g02543 342 SMART ring_2 264 304 IPR001841 -
Lapu7g02543 342 MobiDBLite consensus disorder prediction 322 342 - -
Lapu7g02543 342 Pfam Ring finger domain 264 305 IPR001841 -
Lapu7g02543 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 311 IPR013083 -
Lapu7g02543 342 FunFam E3 ubiquitin-protein ligase RING1-like 227 311 - -
Lapu7g02543 342 Pfam zinc-ribbon 21 54 IPR039525 GO:0061630
Lapu7g02543 342 SUPERFAMILY RING/U-box 259 311 - -
Lapu7g02543 342 MobiDBLite consensus disorder prediction 55 73 - -
Lapu7g02543 342 MobiDBLite consensus disorder prediction 52 73 - -
Lapu7g02543 342 MobiDBLite consensus disorder prediction 114 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02543 Lapu-Chr7 41750928 41752991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02543 175 317 C3H Transcription Factor Family AT5G01980 49.333 5.10e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02543 - - gmx:100780991 528.865