Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02518 ATGTCTGCGGTTGTTTCAGGAAGTGGCATTCAGAAACAATACAGTCTTAGAAGCCCAAAAGTCAATATAGAAGTGATGATGCCAAAAATCAACAAGAACGATAGCAAGTCGATTGAAGATCAGTCTTCAATGTGCCATCAATGTCAGAGAAATGATAAAGGCAGGGTTGTGAGGTGCAAAAATTGTAGTAAGAAAAGATATTGCGTACCCTGTATACTAAATTGGTATCCTCATTTGAAAGAGGATTACATTGCTGAGGCATGTCCTGTGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGAGATCCGATGTACTTATTAAAAAAATGAAGGAAAAAACAGAAACCAATAAAGATGAGAAGGTTGAACTCTCTATGTATTTGCTCCAAGTACTTCTTCCGTATTTAAGATTGTTGGATGAAGAACAAATGATTGAGAACGAGACAGAAGCTAAGATACATGGGATCTCAGTCTCAGAGCTAAATGTTGTACAAGCAGATTATTCTATGGAGGAGCGTGTATATTGTGACAACTGCAAAACGTCAATATTTGATTACCACAGAAGCTGCACAAAATGCTCTTTCGATCTTTGTCTCATCTGTTGCCGTGAGCTTCGTAGTGGGCAGCTTGTAGGTGGTGCAGATCCAATTATGTTGGAGTTTTCCTGGCAAGGTCGTGGTTACTTGCATGGCGAAAAAGAAGATAAAAGGGTAAATCAAATTGAATCAAATGATGTTGCTAAGCCTGTAGTTCGTGAATGGTCAAGATCTGGATGGCATGCTGAAAGTAATGGTAGCATTCCTTGTCCTAAAGTCAGTGATGAATGTGACCATGGTTTTCTTGAACTGAGAAGTGTATTAGGTCAACATTTTATCACTGATTTATTGTGCAAAGCAAATGAACTAGCACAAACATATGAGCTTGGGACCCCTGGCAGCTTCTGTTTGTGTTCAAGGCTTGATAGAAACACAGATGTTAGATATCATAATATGAGGAAGGCTGCTTCCCGTGCAGATTCCAGTGACAACTATTTGTACTGTCCCAGGGCTGTACAACTACAGGATGAGGATTTAAGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTAATCGTTAGCCATGTGATTGATTGTACATCTGGTTTAAGCTGGGAACCTCTTGTCATGTGGCGTGCATTCCGTCAGATGACAAATACCAAGCATGAACAGCATTTGGATGTGAAGGCAATTGATTGCTTAGATTGGTGCGAGGGAGAAATTAATATCCACCAATTCTTTACTGGGTATACGAAAGCTCGTGAGGATTGGCTTGGTTGGCCTCAGATATTGAAATTAAAAGACTGGCCACCTTCTAACTTATTTGAGGAACGCTTGCCTCGACATTGTGCTGAGTTCATATCTTCCTTGCCCTTCAAAGAATATACTGATCCTATTGGTGGTTCTCTTAACCTAGCTGTGAAATTGCCTGAAGATTGTATAAAGCCAGACATGGGGCCAAAGACATATATTGCTTATGGATTTCCTCAAGAGCTTGGACGTGGTGACTCAGTGACTAAGCTCCACTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATAGCTGAAGTTAAATTGGAACCAAAGCATCTTACTGCCATTAAGAAGTTGAAACAAAAGCACTTTGAGCAAGACAAAAGGGACCTACTTAGTGGTGATCAGGATGGAGAAACTAGAGTTGACATGCATAATAATATATCTTCTTCCATAAATTCCTTGGAGAAGGAAAATAATGTCCTAGTCTTGGAAAACGAAAGTGGATGCTGTGATGAGAAAGAAGTTGATCAGTTTCATCAGCCCTCTGTTGGTAGTAAGGATGGTCTTTCATGTGGATCAGAGCTCAAAGAGGTTGACAAAGTAAATATGAAGCAAGAAAGTGATTTGTTGTATGCAGGGGATGGTTCAGAAGGTGCCCTGTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAGTATCTGAGGAGGCATTTCAGAGAGTTTAGGCATATCCATTGCCGTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACCTTCTATCTGACCGTGGAGCATAAGAGGAAACTTAAGGAGGAGTATGGAATTGAGCCCTGGACATTCATTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTAAAGTCATGTATTAAGGTTGCATTGGATTTTGTCTCTCCTGAAAATGTTGGGGAGTGCTTCCGTTTGACAGAGGAATTTCGTACACTTCCCATAAACCATGGGTCTGCTGAGGACAAATTGGAGGTGAAAAAGATGACATTATATGCTATGCAACATGTGATAGAAAAATTGGAGAAAGCAAGGTCCGAAGTAAATAGACCTATAACAGACAAAGGCGAGGTGGAAGAGTAA 2445 0.4098 MSAVVSGSGIQKQYSLRSPKVNIEVMMPKINKNDSKSIEDQSSMCHQCQRNDKGRVVRCKNCSKKRYCVPCILNWYPHLKEDYIAEACPVCRGNCNCKACLRSDVLIKKMKEKTETNKDEKVELSMYLLQVLLPYLRLLDEEQMIENETEAKIHGISVSELNVVQADYSMEERVYCDNCKTSIFDYHRSCTKCSFDLCLICCRELRSGQLVGGADPIMLEFSWQGRGYLHGEKEDKRVNQIESNDVAKPVVREWSRSGWHAESNGSIPCPKVSDECDHGFLELRSVLGQHFITDLLCKANELAQTYELGTPGSFCLCSRLDRNTDVRYHNMRKAASRADSSDNYLYCPRAVQLQDEDLRHFQWHWEKGEPVIVSHVIDCTSGLSWEPLVMWRAFRQMTNTKHEQHLDVKAIDCLDWCEGEINIHQFFTGYTKAREDWLGWPQILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPIGGSLNLAVKLPEDCIKPDMGPKTYIAYGFPQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLEPKHLTAIKKLKQKHFEQDKRDLLSGDQDGETRVDMHNNISSSINSLEKENNVLVLENESGCCDEKEVDQFHQPSVGSKDGLSCGSELKEVDKVNMKQESDLLYAGDGSEGALWDIFRRQDVPKLQEYLRRHFREFRHIHCRPLKQVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHGSAEDKLEVKKMTLYAMQHVIEKLEKARSEVNRPITDKGEVEE* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02518 814 SMART cupin_9 459 765 IPR003347 -
Lapu7g02518 814 SUPERFAMILY Clavaminate synthase-like 357 798 - -
Lapu7g02518 814 Gene3D Cupin 345 773 - -
Lapu7g02518 814 ProSiteProfiles JmjC domain profile. 478 765 IPR003347 -
Lapu7g02518 814 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 29 800 IPR045109 GO:0032454|GO:0033169
Lapu7g02518 814 Pfam JmjC domain, hydroxylase 652 748 IPR003347 -
Lapu7g02518 814 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 40 108 IPR018866 -
Lapu7g02518 814 ProSiteProfiles Zinc finger RING-type profile. 45 92 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02518 Lapu-Chr7 41582071 41603732 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lapu7g02518 JmjC 3.4e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02518 K15601 - gmx:100805723 1362.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02518 7 41582071 41603732 Lapu7g02518 7 41582071 41603732 ECH