Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02501 ATGGATTTTGACGAGTATGAGTATTTAGAGAAAACAGTTGAAAACGCTGAAGTTAAGAAGGAGAAGCATAGGGCTAATGGTGGTGACAGAAGTGTGAAGTCCGAAGAGGGGGGGCATAGTCGCAGTTCTAAGCATAAGAGTGGTGAGAAGGATGACGACGACGTTGAACTCCATTCCAGGCACTCAAAATCTGGAGATGATTCCCGCCATTATGAGAGGAAGAGAGAAAGAGGCTCCTCTCGTCATGGTTTGCAGTCCAGAGACGCAGAGAAGGAGAAGGATCAGCACAGAAGCTCTGGTGGCAGTAGGGATAGGAAGAGGGACAGGGACAGAGATCACGAGAACAAGGATAGGAAGAGAGGTGGGGAGAGAGACAGAGATCGCGAGCGCGACCAAGAAAGGGATAGAAGGGACCGAGGAAGTGAGAGTGAACAGGAACACCGCAGCAGAAGTAGATCCGAACGGCATCGGAGTGATGTGGATGACAGAGACAGAGAAACAATTCTTGATAAAGACAGAGAAATAAGCCGGGATAAGGATTTCAGAGACAGAGAAAGGGTGAGGGAAACAAGGGAAAGGGTTAGAGAAAGCAGGCGACACAAAGAGAAAAAGGAAGAAGCAACCGAACCTGATGCTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCCTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTATATGAGTTCTTCTCGAGGGCTGGCAAGGTACGAGATGTTCGCTTGATCATGGACCGCAATTCAAGGCGTTCTAAGGGCGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGCCAACCTCTCCTAGGTCAACCAGTAATGGTGAAGCCATCAGAAGCGGAAAAGAATTTGGTTCAGTCCACAACATCGGTTGCTGGTGGATCCACTGGACTTATAGGTCCTTATTCTGGGGGAGCGAGAAGGCTCTATGTTGGAAATCTGCATATCAGTATGAGTGAAGCTGATATTCGTAAGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAAGTGGGCAGTGCAAAGGTTTTGGCTTTGTTCAGTTTGCACGCCTTGAAGATGCCAGAAATGCTCAGAGCCTGAATGGTCAATTAGAGATTGGTGGTAGAACAATCAAGGTATCGGCTGTTACAGATCAATCTGGAATGCAAGAAGTTGGAGGAAACACTGGTGATTTTGATGATGATGAAGGAGGCGGCTTGTCCTTGAATGCACGTTCTCGAGCAATACTCATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGCTTCCCTGGGTAATACTGTTGTCAACAACACAGGTCTTATTCTACCAGCAACAGGAAACATACTTGCAGCTGCACAGGGCGGTTCTCCACTTTCTTCTGTTCCCGTAGTATCTGGATTGGCTGGTGGAGGTCTCCAAATTCCCGCGGCTACAATTCCTTCTATTGACACAATCGGTGTCCCAAGTGAATGCTTAATGTTAAAGAACATGTTTGATCCCAAAGACGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCGAAGTTTGGGACGTTAAAACACATATATGTTGACAAGCACAGTGCTGGTTTTGTCTACTTACGTTTTGAAGATACCCAATCAGCAATAAGTGCTCAGCGGTCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTACCTCAGTCATACGAGGATAAATTCCCAGACAGCAGATAA 1812 0.463 MDFDEYEYLEKTVENAEVKKEKHRANGGDRSVKSEEGGHSRSSKHKSGEKDDDDVELHSRHSKSGDDSRHYERKRERGSSRHGLQSRDAEKEKDQHRSSGGSRDRKRDRDRDHENKDRKRGGERDRDRERDQERDRRDRGSESEQEHRSRSRSERHRSDVDDRDRETILDKDREISRDKDFRDRERVRETRERVRESRRHKEKKEEATEPDADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVAGGSTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGQCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNARSRAILMQKLDRSGTASSMVASLGNTVVNNTGLILPATGNILAAAQGGSPLSSVPVVSGLAGGGLQIPAATIPSIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIYVDKHSAGFVYLRFEDTQSAISAQRSLHGRWFAGKMITASFMVPQSYEDKFPDSR* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02501 603 CDD RRM3_RBM39_like 508 590 - -
Lapu7g02501 603 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 602 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lapu7g02501 603 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Lapu7g02501 603 NCBIfam splicing factor, CC1-like family 102 601 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lapu7g02501 603 FunFam Splicing factor, CC1-like protein 504 603 - -
Lapu7g02501 603 Coils Coil 187 207 - -
Lapu7g02501 603 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 400 IPR000504 GO:0003723
Lapu7g02501 603 SUPERFAMILY RNA-binding domain, RBD 211 321 IPR035979 GO:0003676
Lapu7g02501 603 FunFam RNA-binding protein 39 isoform X1 212 304 - -
Lapu7g02501 603 CDD RRM1_RBM39_like 220 292 - -
Lapu7g02501 603 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 509 592 IPR000504 GO:0003723
Lapu7g02501 603 SUPERFAMILY RNA-binding domain, RBD 321 415 IPR035979 GO:0003676
Lapu7g02501 603 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 414 527 IPR029123 -
Lapu7g02501 603 Gene3D - 504 603 IPR012677 -
Lapu7g02501 603 SUPERFAMILY RNA-binding domain, RBD 505 589 IPR035979 GO:0003676
Lapu7g02501 603 MobiDBLite consensus disorder prediction 181 216 - -
Lapu7g02501 603 Gene3D - 184 319 IPR012677 -
Lapu7g02501 603 Gene3D - 320 428 IPR012677 -
Lapu7g02501 603 MobiDBLite consensus disorder prediction 13 165 - -
Lapu7g02501 603 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 533 585 IPR000504 GO:0003723
Lapu7g02501 603 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 394 IPR000504 GO:0003723
Lapu7g02501 603 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 288 IPR000504 GO:0003723
Lapu7g02501 603 Coils Coil 6 26 - -
Lapu7g02501 603 FunFam CC1-like, splicing factor 318 426 - -
Lapu7g02501 603 SMART rrm1_1 220 292 IPR000504 GO:0003723
Lapu7g02501 603 SMART rrm1_1 324 396 IPR000504 GO:0003723
Lapu7g02501 603 SMART rrm1_1 510 588 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02501 Lapu-Chr7 41388033 41399389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02501 220 386 Eukaryotic Initiation Factors Gene Family AT4G34110 28.994 6.40e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02501 K13091 - gmx:100789839 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02501 7 41388033 41399389 Lapu7g02501 7 41388033 41399389 ECH