Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02492 ATGTCTTCTCGTGATGACCATGACATTCACTTCTTGAAGAAAGTTGATGAAAACACACTTCGAAACGGGGATCTGAGAATACCCCGAAGTTTCGTAATTAAATATTGGAAAGATATATCAAATCCACTGCTTCTTTTGCTTCCCAAAGGTGCTGAATGGAAAGTGAATTGGAAAAAAATGGGTGTTGACATTTGGTTAATCGATGAATGGAAGAAATTTATAGAGTTTTATTCTTTGGATGAAGATTATCTCTTGATTTTCAAATATGTGGGCATGTCTCGGTTTGAGGTGGTAATAGTTGATCAAAGTGGCTTGGATATTGTGTATCCTTCAATGGCAACAACTTCATATAGTGCAGAGAATGGTAATTCTTCAGGCGAGTTAAACATCACAAAATCTTTACCAGGTTCTTCTTTTTCCAAGAAGGTGAAAACCAACCCAAGAAAGGAACCTGAAATCTCTCAAGATGTTGAAAATGCATGTGCTCATTCCCAACATGCAAATGATTTGGATAATGCAAAACCCAAAAAAAGAGGTAGAAAAAGAAAGATCTGTGCCAATGTGATATCTTCAAACTCTGGGGATCAGACTATTCAAAGTGAGAGTGAGGAATTGGTAGAGAATACTAAAAGTGGCACTGCTGTGGAGAGAGCCCAAGCTTTCCGTTCTGAGAATCCCTACTTCGTTCGTCGAATGCATGCGTCATACATTGAAAGACATGTTATGGTTATGGCAGGTAGTTTCTTAACAAAAGAAGAAGAAGAGGAACATGACATTCTTACTCTTTGGACATCTGAAGAAAGAGCTTGGCATGTTCATTATTATCGGAATCATAGCAGTGGCCAAATAAATCTTACTAAAGGTTGGATGGATTTTGTAAAAGATAACAACTTGCAAATGGGAAATGTATGTGTTTTTGAGAAAATTGAGAAATTGGGAATTTCATTCAGAGTTTATATTTATAGTGACAAGGAAGAATCAAGTTCTCCTATGATCTCTGATCATAAAATTCATAGATCCAACAAGGTGTTCGAGAATAACTTCAGTGTCTGTATCAAGCCTAATCAGTTCTATCTTATGAATGTTCCAAGACTTTTCTTCAAAAATCATGGGATTGCTAATCCAAGCATAGTGACACTGCAAGTTGGGGAGCAATCATGGAAAGTGAAGCTAGACTCTTACTGTAGATTCAGTAGTGGTTGGTATGATTTTATGAGGGAATGCAGATTGAAGCCTGGAGATGTTTGTCGCCTAGAGTTGATTGATAAGAAAAAGATTGTGTTTAAAGTTACCATTGTAGCAGGAATTCAGTGA 1314 0.3691 MSSRDDHDIHFLKKVDENTLRNGDLRIPRSFVIKYWKDISNPLLLLLPKGAEWKVNWKKMGVDIWLIDEWKKFIEFYSLDEDYLLIFKYVGMSRFEVVIVDQSGLDIVYPSMATTSYSAENGNSSGELNITKSLPGSSFSKKVKTNPRKEPEISQDVENACAHSQHANDLDNAKPKKRGRKRKICANVISSNSGDQTIQSESEELVENTKSGTAVERAQAFRSENPYFVRRMHASYIERHVMVMAGSFLTKEEEEEHDILTLWTSEERAWHVHYYRNHSSGQINLTKGWMDFVKDNNLQMGNVCVFEKIEKLGISFRVYIYSDKEESSSPMISDHKIHRSNKVFENNFSVCIKPNQFYLMNVPRLFFKNHGIANPSIVTLQVGEQSWKVKLDSYCRFSSGWYDFMRECRLKPGDVCRLELIDKKKIVFKVTIVAGIQ* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02492 437 SUPERFAMILY DNA-binding pseudobarrel domain 221 322 IPR015300 -
Lapu7g02492 437 CDD B3_DNA 226 322 IPR003340 GO:0003677
Lapu7g02492 437 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Lapu7g02492 437 MobiDBLite consensus disorder prediction 162 181 - -
Lapu7g02492 437 Gene3D - 2 104 IPR015300 -
Lapu7g02492 437 ProSiteProfiles B3 DNA-binding domain profile. 345 436 IPR003340 GO:0003677
Lapu7g02492 437 Pfam B3 DNA binding domain 15 99 IPR003340 GO:0003677
Lapu7g02492 437 Pfam B3 DNA binding domain 230 313 IPR003340 GO:0003677
Lapu7g02492 437 CDD B3_DNA 360 432 IPR003340 GO:0003677
Lapu7g02492 437 SUPERFAMILY DNA-binding pseudobarrel domain 350 432 IPR015300 -
Lapu7g02492 437 SMART B3_2 11 103 IPR003340 GO:0003677
Lapu7g02492 437 SMART B3_2 228 324 IPR003340 GO:0003677
Lapu7g02492 437 SMART B3_2 348 436 IPR003340 GO:0003677
Lapu7g02492 437 ProSiteProfiles B3 DNA-binding domain profile. 227 324 IPR003340 GO:0003677
Lapu7g02492 437 CDD B3_DNA 10 101 IPR003340 GO:0003677
Lapu7g02492 437 PANTHER B3 DOMAIN-CONTAINING 374 428 - -
Lapu7g02492 437 SUPERFAMILY DNA-binding pseudobarrel domain 9 110 IPR015300 -
Lapu7g02492 437 Gene3D - 206 327 IPR015300 -
Lapu7g02492 437 Gene3D - 329 435 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02492 Lapu-Chr7 41334708 41336666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02492 340 431 B3 DNA Binding Superfamily AT3G18990 31.683 1.25e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu7g02492 B3 4.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02492 - - vum:124838216 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02492 7 41334708 41336666 Lapu7g02492 7 41334708 41336666 ECH