Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02490 ATGTCTTCTGATCAAGGCTGTGATATTCACTTTCTCAAGAAGATCGAGGAGTACACACTTCGAATTGGGGAGCTGAGGATTCCTCGAAGTTTTGTGAACAAATGCTGGGAAGGAATATCAAACCCTGTACTCTTGCTTCTTCCCAACGGTGATGAATGGAAAGTGAAATGGAAAAACCTTGATGCTGATGTTTGGTTGATCGATGATTGGAAGAAATTTGCAGAATTTTATTGTTTGGATCAAGACCATCAGTTGGTGTTTAAATATGTGGGGAAGTCCCAGTTTCAGGTTGTAATATTTGATCAAAGTGGCTTGGAAATGGTGTGTCCTTCTATGGAAGGAGCTTCAGATGGTGAAGGTAGTGGTCACTGTGTGCGCCAGAGTAAGAGGGCACAATTTCTCTTACCATCTTCCCCTTCTACCAAGAAGGTGAAAACCAACCCAAGAAAGGAACCTAGTTGTTATCCCAATGAAGATATGGAAACTAGTAGAGGTAGAAGAAGGATCATATATGCCAATAAGAGATGCTCAAAATTTGAGGCCAAGACTACTCAAAGTGAGGGGCAAAGTGCTTTAGAGAGAGCAAAGGCTTTCCGCTCTGATAATCCCTTCCTCATTCGGGAAATGAAACCATCATACATTAGACTATTACTGGCCATGCCAGGGAATTTTGTAAAAGAACAGTATAGAAAAGAGGGTACAAGCGTTGCTATTCGGACCTCTGACTCTGGGGATAAAACTTGGCTTGCAAAGTTATCTGTGAATTGTTGCAGTGGACAAATAATGCTCACTGCAGGTTGGAGGAATTTTGTAAAGGAGAATAGCTTGAAAATAGGGGATGCATGTGTTTTTGAGCAAATTAAGTCTCCAACTTTTTCATTGAGAGTTCATATTTTCCGTGATGGAGAAGGAACAAATCCTACCATGTTTCCAGGTAATAGCATAGCATCGGAATTGATGGGAGGAAATGATGATGTAGTTGGGGAGACATCATGGCCTGTCACTCTGAGGTGA 1014 0.4152 MSSDQGCDIHFLKKIEEYTLRIGELRIPRSFVNKCWEGISNPVLLLLPNGDEWKVKWKNLDADVWLIDDWKKFAEFYCLDQDHQLVFKYVGKSQFQVVIFDQSGLEMVCPSMEGASDGEGSGHCVRQSKRAQFLLPSSPSTKKVKTNPRKEPSCYPNEDMETSRGRRRIIYANKRCSKFEAKTTQSEGQSALERAKAFRSDNPFLIREMKPSYIRLLLAMPGNFVKEQYRKEGTSVAIRTSDSGDKTWLAKLSVNCCSGQIMLTAGWRNFVKENSLKIGDACVFEQIKSPTFSLRVHIFRDGEGTNPTMFPGNSIASELMGGNDDVVGETSWPVTLR* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02490 337 SUPERFAMILY DNA-binding pseudobarrel domain 9 103 IPR015300 -
Lapu7g02490 337 CDD B3_DNA 203 300 IPR003340 GO:0003677
Lapu7g02490 337 ProSiteProfiles B3 DNA-binding domain profile. 218 302 IPR003340 GO:0003677
Lapu7g02490 337 Gene3D - 6 104 IPR015300 -
Lapu7g02490 337 SMART B3_2 11 103 IPR003340 GO:0003677
Lapu7g02490 337 SMART B3_2 205 302 IPR003340 GO:0003677
Lapu7g02490 337 Gene3D - 182 303 IPR015300 -
Lapu7g02490 337 Pfam B3 DNA binding domain 15 102 IPR003340 GO:0003677
Lapu7g02490 337 Pfam B3 DNA binding domain 207 300 IPR003340 GO:0003677
Lapu7g02490 337 PANTHER B3 DOMAIN-CONTAINING 9 289 - -
Lapu7g02490 337 CDD B3_DNA 10 101 IPR003340 GO:0003677
Lapu7g02490 337 MobiDBLite consensus disorder prediction 144 160 - -
Lapu7g02490 337 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Lapu7g02490 337 MobiDBLite consensus disorder prediction 136 160 - -
Lapu7g02490 337 SUPERFAMILY DNA-binding pseudobarrel domain 198 300 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02490 Lapu-Chr7 41310627 41312389 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02490 11 300 B3 DNA Binding Superfamily AT3G18990 27.811 9.26e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu7g02490 B3 1.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02490 - - ccaj:109795879 320.857