Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02489 ATGGCTGCTCATCCTCCTACGGACCATGCTGTCTTGCCCATACGTTTCTTCAAGACCATTCTTAAATCAAATCTTCAAAGGCTTCAAATCCCCAACAAGTTTGCAAACAGATACGGAGGAAACTTGTCAAATCCAGTGTTTCTGAAGCCACCAGATGGCACTCAATGGGAAGTTTACTGGACCAAACAGAAGGGTGAGATGTGGTTCGAAAAGGGTTGGAAGGAATTTGTTGAAAACTATTCCCTGGATCATGGTCACTTCGTTTTCTTCACATTTGAAGGAACTTCTGAGATTGATGTACACATGGTTGATCAGAGTGCACTAGACATACAATACCCTGAAGAAAATCAAAGCATTGACCACTGTGATGATGAATCACTTCAACTTTTGGAAGAAGGGTCTGATTCTGACCAGAATACTGCACAGTTTGAAGGTGAGGAGGTTACTGAAGGAACTTTATCATTGAATTGGCCAAGGGAAGCTAGAGCGAAGGAGTTGGCAAGAAAATTCAACTCGTGGAATCCATTTTTCACTGTTATCATTAGGCCATATAATCTGACAACTCAAACGCTGAATATTCCAGATTTGGAAGGTTACATTGATAAGAAGAAGAAGTATGTTACAGTGGAAGTTGGGAGAAGATCATGGAGCGTGAGGTTGGTGGGTTCCGATGGTAAACGCTTTGGTTCTGGTTGGCGAGTGTTTGCAAAGGAGAATGATTTGAAAGCAGGAGATGTTTGTATCTTTGAACTCATTTTCAGAAATGGTTCTGTTTTCAAAGTTCATATTTTCAGAAGCCAATTAGCTTAA 810 0.4086 MAAHPPTDHAVLPIRFFKTILKSNLQRLQIPNKFANRYGGNLSNPVFLKPPDGTQWEVYWTKQKGEMWFEKGWKEFVENYSLDHGHFVFFTFEGTSEIDVHMVDQSALDIQYPEENQSIDHCDDESLQLLEEGSDSDQNTAQFEGEEVTEGTLSLNWPREARAKELARKFNSWNPFFTVIIRPYNLTTQTLNIPDLEGYIDKKKKYVTVEVGRRSWSVRLVGSDGKRFGSGWRVFAKENDLKAGDVCIFELIFRNGSVFKVHIFRSQLA* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02489 269 ProSiteProfiles B3 DNA-binding domain profile. 176 267 IPR003340 GO:0003677
Lapu7g02489 269 CDD B3_DNA 15 104 IPR003340 GO:0003677
Lapu7g02489 269 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Lapu7g02489 269 CDD B3_DNA 176 265 IPR003340 GO:0003677
Lapu7g02489 269 Pfam B3 DNA binding domain 22 97 IPR003340 GO:0003677
Lapu7g02489 269 Pfam B3 DNA binding domain 176 266 IPR003340 GO:0003677
Lapu7g02489 269 SUPERFAMILY DNA-binding pseudobarrel domain 170 266 IPR015300 -
Lapu7g02489 269 Gene3D - 13 107 IPR015300 -
Lapu7g02489 269 PANTHER B3 DOMAIN-CONTAINING 14 261 - -
Lapu7g02489 269 Gene3D - 158 267 IPR015300 -
Lapu7g02489 269 SMART B3_2 16 106 IPR003340 GO:0003677
Lapu7g02489 269 SMART B3_2 176 267 IPR003340 GO:0003677
Lapu7g02489 269 SUPERFAMILY DNA-binding pseudobarrel domain 15 105 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02489 Lapu-Chr7 41307091 41308234 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02489 15 147 B3 DNA Binding Superfamily AT1G49475 35.556 1.94e-19 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu7g02489 B3 9.4e-14 CL0405