Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02488 ATGGCTTCTCATTGTCCCGGGAGAGATGCTACCCTGCCAATCTACTTCTTCAAAGTTATTCTTCAAACAAATCTTGAAAGGCTTAAGATACCCAACAAATTTGCTAGCAAATATGGAGGTGGTTTGCCAAATCCCTTGTTTATCAAGCCTCCTAATGGAACTGAATGGAAAGTGAATTGGGCAAAACAGAACGGTGAGATTTGGCTGGAAAAGGGTTGGAAAGAATTTGTAGAACATTATTCTCTACAGCAAGGACATTTAGTTTTCTTCAAATACGAGGGAACTTCTCAGATTCATGCAATCATATTTGACCAAAGTGCACTAGAAATAGACTATCCCTGTGGCACTAGTGATGAAAATGACAACCTTGATCAAACTAAGGAGGAACCCAACATAATTTTGGATGAAGGGCCAGATCAGAAGGCTGAACTAATAAGAGGTGAGAAGTCTTCTCATAGAACTTCATCTTTGAACTGGCCAACGCAAACTCGAGCACGGGAAGTAGCATGCAATTTCGTCTCATGCAATCCCTTTTTCACTGTTTTCATAAAACCTGTTCATGCCACAACATACCGGCTGAGCGTACCAGATTTGAAAGGCATTATTGAGGACAAGGAGAAGGAGAAGGAGAAGTATGTGGTGCTGCAGCTTGGGGAAAGATCATGGAAAGTAAAGTTGATCAACAACAGTAACAGCTCTTTTACACAAAGCAGGTTCGCTGCTGGCTGGTACGTGTTTTTCGATGAAAGTGAATTGCATCCAGGAGACGTTTGTGTATTTGAACTGATTAGCAAAGAGGATTGTGTTTTTAAAGTTCATGTTTTCAAAAGCCACCGCTAA 840 0.4095 MASHCPGRDATLPIYFFKVILQTNLERLKIPNKFASKYGGGLPNPLFIKPPNGTEWKVNWAKQNGEIWLEKGWKEFVEHYSLQQGHLVFFKYEGTSQIHAIIFDQSALEIDYPCGTSDENDNLDQTKEEPNIILDEGPDQKAELIRGEKSSHRTSSLNWPTQTRAREVACNFVSCNPFFTVFIKPVHATTYRLSVPDLKGIIEDKEKEKEKYVVLQLGERSWKVKLINNSNSSFTQSRFAAGWYVFFDESELHPGDVCVFELISKEDCVFKVHVFKSHR* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02488 279 CDD B3_DNA 15 104 IPR003340 GO:0003677
Lapu7g02488 279 SMART B3_2 178 278 IPR003340 GO:0003677
Lapu7g02488 279 SMART B3_2 16 106 IPR003340 GO:0003677
Lapu7g02488 279 SUPERFAMILY DNA-binding pseudobarrel domain 175 277 IPR015300 -
Lapu7g02488 279 PANTHER B3 DOMAIN-CONTAINING 15 273 - -
Lapu7g02488 279 Gene3D - 160 278 IPR015300 -
Lapu7g02488 279 ProSiteProfiles B3 DNA-binding domain profile. 178 278 IPR003340 GO:0003677
Lapu7g02488 279 CDD B3_DNA 178 276 IPR003340 GO:0003677
Lapu7g02488 279 SUPERFAMILY DNA-binding pseudobarrel domain 14 113 IPR015300 -
Lapu7g02488 279 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Lapu7g02488 279 Gene3D - 13 107 IPR015300 -
Lapu7g02488 279 Pfam B3 DNA binding domain 178 276 IPR003340 GO:0003677
Lapu7g02488 279 Pfam B3 DNA binding domain 23 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02488 Lapu-Chr7 41300066 41301322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02488 16 145 B3 DNA Binding Superfamily AT1G49475 34.091 2.72e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu7g02488 B3 3.8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02488 - - gmx:102661781 382.104