Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02477 ATGGCGGCATCCTCTTCCTCAGCATCACTCTTTGGATTCAGAGAAGACGATCAGAACCAGATGAAGCAACAGCATTCCTTGACACCATCTTCGTCAACAACTCCAGCTGCACCACCACCCCAGAAGAAAAAGAGAAACCAACCTGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGTAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACATAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCGAGGGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGAGAATACAGATGTGACTGTGGTACACTCTTCTCCAGGAGAGACAGTTTCATCACCCACAGGGCGTTCTGCGATGCACTTGCTCAAGAGAGTGCAAGACAGCCACCAAACCTTAGCGCCGCCATTGGCACCCACCTCTTCGGAACCACCGCCAACACCATCCCCTTAAACCTTTCTCAGGTTGCTTCTCACATCTCCAACATCCAAGACCCCAACACCCAACCAACCGAACTCCTCCGCCTCGGTGGCGCTGCCGCCGCGGCCAGAACCGCCCAGTTGGACCACCTCCTAGGTTCTCCTTTCAGACCCTCCCAACAACAACAACCCTTCTTCATCGAACCTAACCAAAGCTACCACCCCGACCAACACCAACAACAAGGGCTGCTCCAAAACAAACCCTTCCAACAAGGACTAATGCAACTCTCTGATCATCTCAGCAACAGCAACTCACCGTTCAACCTTCCCTTCCTTTCAAACACCACCACCAATGCTTCATTCTCTGAAAACTTCAACAACGCCAACAACAACAGCAGCAACAACAACAATGAGGGCACTAACTTCTTCACAACTTCAAGCGCTCCTTCTCTCTTCAGCAACAACAACGCTGTCAGTGCCAACGCCAATGCCAACGCACTATCTCACATGTCCGCAACTGCACTGCTTCAGAAAGCTGCACAAATGGGTGCATCTTCGAGCAACAGCACCGCTTCGCTGTTGAAAAGCTTCGGAAGCGCGTCCTCCAGCAGCGTCGCAAAATCCGAGCAACACAGGCCACTGGTGAATGCTGCAAACTACGGTGGCGGAATCTTCGGAGGGAACGTGAACGAACAGAGTAACAGCAACCTGCAAGATTTGATGAACTCGTTCGCTGTCAGTGGAAACTCTTCGATTTTCGAAGGTGGGTTTGACGCGTATGATCATAACAGTAACAACAACAACAGGGAGGGAAAAGTGCATGCAATGAGTGGAAGCAGCAGCATTGGAGGGTCTGATAGACTCACCCGCGATTTTCTGGGTGTTGGTCAGATAGTTCGAGGCATGAGTGGGAGTGGAGGGGTTGCACAGAGAGAACAACAACAACAACATGGCTTCAACTTGAGTTCTTTGGAAGCAGATCAAAGAAATAATAGTAAGAGCAATAATAACAACAATAATAACAATGCTGCGCCGTCAGACCAAGCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1725 0.4933 MAASSSSASLFGFREDDQNQMKQQHSLTPSSSTTPAAPPPQKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLSAAIGTHLFGTTANTIPLNLSQVASHISNIQDPNTQPTELLRLGGAAAAARTAQLDHLLGSPFRPSQQQQPFFIEPNQSYHPDQHQQQGLLQNKPFQQGLMQLSDHLSNSNSPFNLPFLSNTTTNASFSENFNNANNNSSNNNNEGTNFFTTSSAPSLFSNNNAVSANANANALSHMSATALLQKAAQMGASSSNSTASLLKSFGSASSSSVAKSEQHRPLVNAANYGGGIFGGNVNEQSNSNLQDLMNSFAVSGNSSIFEGGFDAYDHNSNNNNREGKVHAMSGSSSIGGSDRLTRDFLGVGQIVRGMSGSGGVAQREQQQQHGFNLSSLEADQRNNSKSNNNNNNNNAAPSDQAFGGGGGNFQ* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02477 574 Gene3D Classic Zinc Finger 125 204 - -
Lapu7g02477 574 SMART c2h2final6 112 142 IPR013087 -
Lapu7g02477 574 SMART c2h2final6 71 93 IPR013087 -
Lapu7g02477 574 SMART c2h2final6 147 167 IPR013087 -
Lapu7g02477 574 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Lapu7g02477 574 MobiDBLite consensus disorder prediction 519 574 - -
Lapu7g02477 574 MobiDBLite consensus disorder prediction 523 563 - -
Lapu7g02477 574 MobiDBLite consensus disorder prediction 1 32 - -
Lapu7g02477 574 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Lapu7g02477 574 MobiDBLite consensus disorder prediction 480 502 - -
Lapu7g02477 574 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 538 IPR031140 -
Lapu7g02477 574 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lapu7g02477 574 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Lapu7g02477 574 MobiDBLite consensus disorder prediction 1 55 - -
Lapu7g02477 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Lapu7g02477 574 FunFam protein indeterminate-domain 12-like 50 118 - -
Lapu7g02477 574 Gene3D Classic Zinc Finger 54 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02477 Lapu-Chr7 41183478 41190636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02477 10 523 IDZ Gene Family AT2G02070 49.040 1.42e-135 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g02477 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02477 K25870 - gmx:100799389 778.089