Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02461 ATGGCTACTCCTCTTGATCAGAGAAGTGCAACCCTGCCGGTCCTTTTTTTCAAGATTATTCTTGAAACTAATGTTGAAAGGATAGGTACTAATAATAGGTTCTTTCAGAAACTACCCAATAAATTTACAGGGAGATATGGAGATTCTTTGTCAAATCCGGTGTCTCTTAGGCCTCCAGACTTCAGGAAATGGGTAGTGCACTGGACAGAAGAGAATGGTGAAATTTGGCTCGAAAATGGTTGGAAAGAGTTCGTTAAAAATTACTCTCTGAGTCACGGATATTTGGTGGTGTTTAACTACAAAGGAACTTCCTACATTGATGTACTCATACATGATCAAAGTGGTATAGAATTAGATTATTTTTCTTCTGCTTATGGATCAGTTAATACGGTGAATGCAACTGTGCAAAAGACTAGACCACGACCAAAGTCATTAATGGTCTCTTCTCAGCCTCGTAAGGAAACACCAAGAGGTGGACAACTTATTATGGCAATAGACCCCAATGTGCAAGAACTGCATGCGGGTGTTAGTTCTGATCAAGGGACAAAGGTTAGAAAAATAATCAAGCATCAACCAAAATGTGTGAATGCTGCTCAAATTGGAACATGTTTGAATATGCCTGAGAAACAAAGAGCTCAGGAAATAACCAAAATATTCAAATCAATCCATCCTTTTTTCACGCTTGAGATAGAGCCGTCTAATTTGGAAGAAAATGCTTTTAAAGACGTGCCCAAGTTTTTGGATTGTATGAACTGCGAGAAGACTGTGATGTTGCGAGTAAAGAATAGGTCGTGGGGTGTGAAGTTAATCTGTGATAGTGAAAGGCCATGTGATCGGTTCTCTTCTGGTTGGTCTATGTTTGCAAGAGAGAGTAAATTGAAAGCTGGTAACATTTGTGTCTTTGAGGTGATTAATCCTGCATTTCCGCTGCTTCAAGTTCACGTTTACAAAAGCTAG 957 0.3929 MATPLDQRSATLPVLFFKIILETNVERIGTNNRFFQKLPNKFTGRYGDSLSNPVSLRPPDFRKWVVHWTEENGEIWLENGWKEFVKNYSLSHGYLVVFNYKGTSYIDVLIHDQSGIELDYFSSAYGSVNTVNATVQKTRPRPKSLMVSSQPRKETPRGGQLIMAIDPNVQELHAGVSSDQGTKVRKIIKHQPKCVNAAQIGTCLNMPEKQRAQEITKIFKSIHPFFTLEIEPSNLEENAFKDVPKFLDCMNCEKTVMLRVKNRSWGVKLICDSERPCDRFSSGWSMFARESKLKAGNICVFEVINPAFPLLQVHVYKS* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02461 318 ProSiteProfiles B3 DNA-binding domain profile. 256 318 IPR003340 GO:0003677
Lapu7g02461 318 Gene3D - 205 318 IPR015300 -
Lapu7g02461 318 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Lapu7g02461 318 CDD B3_DNA 224 317 IPR003340 GO:0003677
Lapu7g02461 318 CDD B3_DNA 15 112 IPR003340 GO:0003677
Lapu7g02461 318 SUPERFAMILY DNA-binding pseudobarrel domain 222 315 IPR015300 -
Lapu7g02461 318 Gene3D - 13 115 IPR015300 -
Lapu7g02461 318 SMART B3_2 225 317 IPR003340 GO:0003677
Lapu7g02461 318 SMART B3_2 16 114 IPR003340 GO:0003677
Lapu7g02461 318 SUPERFAMILY DNA-binding pseudobarrel domain 15 120 IPR015300 -
Lapu7g02461 318 PANTHER B3 DOMAIN-CONTAINING 16 304 - -
Lapu7g02461 318 Pfam B3 DNA binding domain 36 103 IPR003340 GO:0003677
Lapu7g02461 318 Pfam B3 DNA binding domain 228 305 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02461 Lapu-Chr7 41054487 41055844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02461 37 317 B3 DNA Binding Superfamily AT3G18990 25.538 1.18e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu7g02461 B3 7.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02461 - - vun:114192490 350.517