Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02450 ATGCTCCCCATCACCTGCATTCTTTTAATGTGCCTTCTAAGTTCTTTCTCTCCCCCAATCGAAGCTCTCCTCAACCTCACCGTACTACCCCACCAACACCCTCACCCTGAATCCATCGTCCACGAACTTCAACGGAAGGTCAATGTCTCGTTGTGGAGAAGGCAAACACTGTCCAAGGACCAACAACAACCCACGTGTCTCACCGGAAACCCAATCGACGACTGCTGGCGGTGCGACCCCAACTGGGCGGCGAACCGGCAGAAGCTGGCGGAGTGCAGCGTCGGGTTCGGAAAAGACGCCATGGGCGGGAAGGGCGGACAGATCTACGTTGTGACGGACTCGTCGGACCGCGACCCAGCCAACCCCGTCCCCGGCACGCTCCGGCACGCCGTCATCCAAGACGAGCCTCTCTGGATCGTTTTCGCGGCCGACATGACCATAAACCTCAAACACGAGCTCATCTTCAACAGTTTCAAAACCGTCGACGGCCGCGGCGCCAACGTCCATGTCACCGGTCACGGCTGCATCACGCTCCAGTATGTCTCCAACGTTATCATCCACAACATCCACGTCCACCACTGCACGCCTTCAGGGAACACGAACATACGCGCCAGTCCAACGCACGTGGGGTGGAGGGGGAGATCGGACGGCGATGGCATCTCCATCTTCGGCTCCCGGAAGATCTGGATCGACCATTGCTCCCTCTCTTACTGCACGGATGGCTTGATCGACGCCATAATGGGTTCCACCGCGATTACTATTTCCAACAACCACTTCGCCCACCACGATGAGGTCATGCTCTTGGGACACAACGATAAGTACTCCCCCGATCGAGGCATGCAGGTTACCATTGCCTTCAATCACTTCGGCGAGGGTTTGGTGCAGCGCATGCCACGTTGCAGACTCGGATACATCCACGTTGTCAACAATGATTTCACGCAGTGGCAGATGTATGCTATCGGCGGTAGCGCTAACCCCACCATCAACAGCCAGGGTAACCGTTACACCGCCCCCTCCGACCCTGATGCCAAAGAGGTGACGAAGCGCGTGGACACAGACGACAGAGAGTGGAGTGGCTGGAATTGGAGAACGGAAGGGGACATAATGGTAAATGGAGCATTCTTTGTACCTTCAGGTGCGGGGCTGAGTGCACAGTATGCAGAGGCCACCAGTGTGCAACCCAAATCCGCCGTGCAAATTGACCAGCTCACCATGTATTCCGGTGTCTTCGGTGATCCCAGGGATAATGGGGATCTGTATCCCGGTTTCAACGGTGGTGGGACCGTGACCGGCGCAACCAGCAGGGGCAACAGTGCGGGGTCCAGCAGTGACGATGGAGACTTCTTCGGGATGATATTCAGAGGTAGCAGCAGCCATGCAGCGCCACCATCATCACCCTCTTCGTCCATTGTATTTGTTACATCCTTTTTGTCTCTTCTAATTATTCTCATTTTGGACACTTCCACCTACCATCCCATTCTATGA 1485 0.5582 MLPITCILLMCLLSSFSPPIEALLNLTVLPHQHPHPESIVHELQRKVNVSLWRRQTLSKDQQQPTCLTGNPIDDCWRCDPNWAANRQKLAECSVGFGKDAMGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLKHELIFNSFKTVDGRGANVHVTGHGCITLQYVSNVIIHNIHVHHCTPSGNTNIRASPTHVGWRGRSDGDGISIFGSRKIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPSDPDAKEVTKRVDTDDREWSGWNWRTEGDIMVNGAFFVPSGAGLSAQYAEATSVQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSRGNSAGSSSDDGDFFGMIFRGSSSHAAPPSSPSSSIVFVTSFLSLLIILILDTSTYHPIL* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02450 494 FunFam Pectate lyase 69 411 - -
Lapu7g02450 494 PANTHER PECTATE LYASE 18-RELATED 32 410 IPR045032 GO:0030570
Lapu7g02450 494 SUPERFAMILY Pectin lyase-like 70 388 IPR011050 -
Lapu7g02450 494 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Lapu7g02450 494 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Lapu7g02450 494 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Lapu7g02450 494 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Lapu7g02450 494 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Lapu7g02450 494 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Lapu7g02450 494 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Lapu7g02450 494 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Lapu7g02450 494 SMART amb_all 144 341 IPR002022 -
Lapu7g02450 494 Pfam Pectate lyase 152 333 IPR002022 -
Lapu7g02450 494 Gene3D - 69 411 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02450 Lapu-Chr7 40893352 40899411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02450 1 490 Polysaccharide Lyase AT3G53190 62.348 0.0 587
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02450 7 40893352 40899411 Lapu7g02450 7 40893352 40899411 ECH