Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02444 ATGGCTGCGAAAGAAGATAATCGAATATTTGTGGGTGGTTTATCTTGGGACATCACGGAGCGTCAACTCGAGCACGCCTTTGCTCGTTACGGCAAAATACTCGAATGCCAGATCATGATGGAAAGGGATACAGGCCGTCCACGAGGATTTGGGTTTATCACATTTGCAGACCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACGTGAAATTGGTGATCGCATCATCTCTGTCAACAAGGCGCAGCCTAAGATGGGGGGTGATGATGTTGACCAAGGTTACAGAGGCAGCTACTCATCAGGTGGTAGGGGAAGCTATGGTGCTGGAGATAGGATAGGACAGGATGACTGCTTCAAATGTGGGCGTCCAGGACACTGGGCCCGGGATTGTCCTTTGGCAGGAGGAGGAGGTGGTGGTCGTGGCCGTGGTGGTAGTTCATTTTCTTCACGTCCTAGGTTTGTAGCTGCTGGTGGACACGGTGATCGCCTTGGTGGGGAACGCGATCGATATGTGGAGGACCGTTATGATGGGGGACGCTATGGAGATAGGGATCGTTTTGACAACCGTGACTACAAATATGGCAGCCGTGATCGATATACCAGTGACAGGTATCCAACCAGTGGAGATCGATTTGGAAGCGATCGATACGGGAGTGGGTCAGATCATTACCCACAAAATGGTTATGGAAAGGAAAGAGGGTATGAGCGATACGGTGGTCCAAGAGGCGGTGGTGATAGGTATGGAAGTGGAATAGGAGGTCGAGATGAAGGAAGGAGTTACAGGGGTAGACCTGGTCCCTATGACCGCCCAACCAGGGCCTCTCGTCCATCACTCGACCGTTACTGA 852 0.5164 MAAKEDNRIFVGGLSWDITERQLEHAFARYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRIISVNKAQPKMGGDDVDQGYRGSYSSGGRGSYGAGDRIGQDDCFKCGRPGHWARDCPLAGGGGGGRGRGGSSFSSRPRFVAAGGHGDRLGGERDRYVEDRYDGGRYGDRDRFDNRDYKYGSRDRYTSDRYPTSGDRFGSDRYGSGSDHYPQNGYGKERGYERYGGPRGGGDRYGSGIGGRDEGRSYRGRPGPYDRPTRASRPSLDRY* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02444 283 SUPERFAMILY Retrovirus zinc finger-like domains 102 138 IPR036875 GO:0003676|GO:0008270
Lapu7g02444 283 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 276 - -
Lapu7g02444 283 MobiDBLite consensus disorder prediction 137 283 - -
Lapu7g02444 283 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Lapu7g02444 283 Gene3D - 118 160 - -
Lapu7g02444 283 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Lapu7g02444 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Lapu7g02444 283 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lapu7g02444 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lapu7g02444 283 Gene3D - 1 117 IPR012677 -
Lapu7g02444 283 MobiDBLite consensus disorder prediction 163 206 - -
Lapu7g02444 283 FunFam glycine-rich RNA-binding protein RZ1C 1 114 - -
Lapu7g02444 283 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Lapu7g02444 283 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02444 Lapu-Chr7 40832398 40837983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02444 9 88 C2H2 Transcription Factor Family AT2G19380 43.750 1.29e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02444 - - gmx:100776333 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02444 7 40832398 40837983 Lapu7g02444 7 40832398 40837983 ECH