Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02424 ATGAGACCAGAAGGAAACCCGTTAGATCTTAACAATTTGCCCGATGAGTACTCTAGGGATGGCAAACAAGTCCTCGAAGACCATACCTCTTCACCCGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTTAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACACTGAACCAGGCTCGTCAACTGGTCTTTCGTAGTGATCATAGCCTTGCTGCACAAGGTGCCCCTCACTTAGGATGCTGCCAACCCATAGGAACTGGGGGTTATCACCCATCAGGAGATCCAACCGCACCGCTGAGATTTCCGAGGTACTTCTCAGGTTCATCCTCAACTCACATGCCACCACCAGCACCTGTACCACCACAGCCATACCTGTATGCCTCACCTACAAGGCCAGTGTCTTTTGGGTCATCACACTTCCCTCACCAGCATGCGGTGAATGATTACTATGTGGGTCATGTGATGAGTGGGAACCACGGACACTATGTGGGAGGAGGAGGAGGAGGAGGAGAGAGCACAAGTAGTTACACATGCATTGGTGCACCGGTGGGACAAGGTGGCGGGTTTGGTGGTGGTGGTAAGGACGGGTCACTGCATAATAATCATAATCAGGAGGAAGGGTTGAGTTGGGGAAGGGGCTATTCAGCAGGAGCACAGCATCGTTTGGATCCTCCCTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA 789 0.5184 MRPEGNPLDLNNLPDEYSRDGKQVLEDHTSSPGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNQARQLVFRSDHSLAAQGAPHLGCCQPIGTGGYHPSGDPTAPLRFPRYFSGSSSTHMPPPAPVPPQPYLYASPTRPVSFGSSHFPHQHAVNDYYVGHVMSGNHGHYVGGGGGGGESTSSYTCIGAPVGQGGGFGGGGKDGSLHNNHNQEEGLSWGRGYSAGAQHRLDPPSAINRFQDGF* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02424 262 Gene3D Classic Zinc Finger 29 103 - -
Lapu7g02424 262 MobiDBLite consensus disorder prediction 217 262 - -
Lapu7g02424 262 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Lapu7g02424 262 PANTHER ZINC FINGER PROTEIN JAGGED 20 250 IPR045320 GO:0003700
Lapu7g02424 262 MobiDBLite consensus disorder prediction 15 46 - -
Lapu7g02424 262 FunFam Zinc finger protein STAMENLESS 1 26 101 - -
Lapu7g02424 262 SUPERFAMILY beta-beta-alpha zinc fingers 44 96 IPR036236 -
Lapu7g02424 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Lapu7g02424 262 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02424 Lapu-Chr7 40569037 40571065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02424 4 214 C2H2 Transcription Factor Family AT1G13400 44.907 5.66e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g02424 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02424 - - aprc:113871902 440.654