Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02414 ATGAAGGTTTTCGTGAAGACTCTCAAAGGCACTCATTTCGAAATCGAAGTGAAGCCTCAAGACACGGTTTCTGAAGTGAAAAAAAGTATTGAAACTGTTCAAGGTGCAGATGTCTATCCTGCTACCCAGCAAATGCTAATTCATCAAGGCAAAGTTCTGAAGGATGCTACTACCTTGGAGGAGAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCACATCTGGTGAAGGATCTACTACTTTAACTGCACCATCGACCAAGACACCACAGACTAGTGCGCCTCCTACTTTAACAACGACAGTGTCAGCAGCACCTCAAGCTCCTGCTGCAACTGAGGCAGTGCCTGCGACTGTTACTGCACCTGTCTCTTCACCTTCTCCAGCTCCAGCTCCTGCCTCTATTTCTTCAGGAACTCCCGTCAGGGAGGGGTTTGATATCTATGGGCAGGCTGCATCCAATCTCGTTGCTGGGAGCAACTTGGAGGGAACAATTCAGCAAATTATTGACATGGGTGGAGGGAGCTGGGATAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATCTGTATTCAGGCATCCCTGAGCAAGTTGAAGCTCCACTTGTAGCCCGAGCACCTGCAGGTGCTCAACCTGCAAATCCTCCTGCTGCTGCTCCACAAACAGCACAACCTGCTCCGGTTACCTCAACTGGACCTAATGCTAATCCTTTGGACCTTTTTCCGCAGGGCCTTCCCAATGTGGGTTCTGGTGCTGCTGGTGCTGGCTCATTGGATTTTCTACGCAGTAGTCAACAATTCCAAGCCTTGCGGGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTAGAGATCATCAAGCTGATTTCCTACGCCTGATAAATGAACCTGTGGAAGGTGGTGAAGGGAACATATTGGGACAGCTGCCAGGTGGCATGCCACAAGCAGTGACTGTTACTCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTCTACTTCGCGTGTAACAAAAATGAGGAACTGGCTGCCAATTACCTTATAGATCACATGCATGAGTTCGATGAACAATAG 1200 0.4742 MKVFVKTLKGTHFEIEVKPQDTVSEVKKSIETVQGADVYPATQQMLIHQGKVLKDATTLEENKVAENSFIVIMLSKSKSTSGEGSTTLTAPSTKTPQTSAPPTLTTTVSAAPQAPAATEAVPATVTAPVSSPSPAPAPASISSGTPVREGFDIYGQAASNLVAGSNLEGTIQQIIDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQVEAPLVARAPAGAQPANPPAAAPQTAQPAPVTSTGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRSSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQLPGGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLIDHMHEFDEQ* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02414 399 Gene3D - 264 329 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lapu7g02414 399 SMART CBM 269 314 IPR006636 -
Lapu7g02414 399 Pfam XPC-binding domain 273 328 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lapu7g02414 399 SUPERFAMILY UBA-like 164 214 IPR009060 GO:0005515
Lapu7g02414 399 SUPERFAMILY UBA-like 335 397 IPR009060 GO:0005515
Lapu7g02414 399 Gene3D - 160 210 - -
Lapu7g02414 399 FunFam UV excision repair protein RAD23 1 80 - -
Lapu7g02414 399 SMART ubq_7 1 75 IPR000626 GO:0005515
Lapu7g02414 399 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 351 392 IPR015940 -
Lapu7g02414 399 FunFam UV excision repair protein RAD23 homolog 160 210 - -
Lapu7g02414 399 NCBIfam UV excision repair protein Rad23 1 397 IPR004806 GO:0006289
Lapu7g02414 399 CDD UBA1_Rad23_plant 161 210 - -
Lapu7g02414 399 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 165 208 IPR015940 -
Lapu7g02414 399 CDD Ubl_Rad23 1 74 - -
Lapu7g02414 399 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lapu7g02414 399 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 387 - -
Lapu7g02414 399 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lapu7g02414 399 MobiDBLite consensus disorder prediction 79 143 - -
Lapu7g02414 399 PRINTS DNA repair protein Rad23 signature 348 364 IPR004806 GO:0006289
Lapu7g02414 399 PRINTS DNA repair protein Rad23 signature 299 321 IPR004806 GO:0006289
Lapu7g02414 399 PRINTS DNA repair protein Rad23 signature 380 395 IPR004806 GO:0006289
Lapu7g02414 399 PRINTS DNA repair protein Rad23 signature 365 379 IPR004806 GO:0006289
Lapu7g02414 399 MobiDBLite consensus disorder prediction 223 247 - -
Lapu7g02414 399 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Lapu7g02414 399 MobiDBLite consensus disorder prediction 79 113 - -
Lapu7g02414 399 Pfam UBA/TS-N domain 354 389 IPR015940 -
Lapu7g02414 399 Pfam UBA/TS-N domain 170 205 IPR015940 -
Lapu7g02414 399 FunFam UV excision repair protein RAD23 B 264 329 - -
Lapu7g02414 399 SMART uba_6 167 207 IPR015940 -
Lapu7g02414 399 SMART uba_6 354 391 IPR015940 -
Lapu7g02414 399 SUPERFAMILY XPC-binding domain 270 335 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lapu7g02414 399 Gene3D - 346 393 - -
Lapu7g02414 399 FunFam UV excision repair protein RAD23 homolog 345 393 - -
Lapu7g02414 399 Gene3D - 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02414 Lapu-Chr7 40414932 40418987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02414 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 1.46e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02414 K10839 - gmx:100814162 605.905