Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02330 ATGGATTCAGTGCCTGCTGACGTGTCTAATACACATCCTATCAAAGATCCACCCACTTCTTCTCCTGCTAAAGAGAGTGATGGGCAAGCTTCTGCTGCTTTAGTTTCTGAGCAAGATAATTCAGCACATGAGGCACCATCTATGCTATCCCCACGTGGCATATCGTCTTGGACCAAAAGCTTGAAAATTTCTCAGTCATTTTCTGGCTCCCAAGATGACTCATCAAGTGGAAATGCTGGGAAATCAACTTTTGCACGATTCACTAGTAATCTGGGATTGAGGTTGTCTCCAAAGTCTCCTGTAGAAGATGACAGTTCCAATGAAACTGCTGCACAATCTAATTTGTTTGGAAGCATTACGAAAGGCCTGGTTGACACTTCTAAGAATGCTGTGAAAGCTGTGCAGGTTAAGGCACGCCATGTTGTTTCCCAGAATAAACGAAGATACCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAAAACATCATTGCAATGGGATTCCCTGCTGGTGACATGAGCTCTGGGTTTTTCGGTTATGTTGAAGGATTTTACAGAAATCATATGGAAGAAGTGATTAAGTTTTTTGAAACTCACCATAAGGATAAATACAAAGTTTATAATCTTTGTTCTGAGCGGTTGTATGATGCATCATTGTTTGAGGGGAAGGTTGCTAGCTTCCCTTTTGATGACCACAATTGCCCACCAATTCAACTAATTATATCATTCTGTCAAAGTGCTTACTCATGGTTGAAACAAGACATTGAGAATGTTGTGGTCGTCCACTGTAAGGCCGGAATGGCTCGGACAGGGTTGATGATTTCTAGTCTTCTATTATTCTTAAAGTTCTTTCCAACTGCTGAGGAATCAATGGATTACTATAATCAGAAAAGATGTGTTGACGGAAAGGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCTTAACTTACTTCAACGGTGAAAACCCTCCTGCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGCCCTTACTGGATTAGGCCCTCTGTAACTGTCTCAGATCATAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCGAGAACCAAGGAGCTTTTGCCAGAAGATTTTTGGTTCAGTGCTCCAAAGAAGGGAGTGATGGTATTTGCTTTGCCAGGAGAGCCTGGTCTTACCGAGTTGTCCGGGGACTTCAAAATTCACTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACAGAAAATAGAAAAGTATTGAACACCGGTGATCTTGATGGCTTTGACAAGAGAAAATTGCCTTCTCCGGGATTTATGGTTGAGGTTGTGCTCGTGGACTATAATGGCAATGTTGTAACTTCGCAATCTGAAACTACTACAACGAAATCAGACGAGAGTGCAAGTGCCAGTCCTGCTGGTCCTGCGCCAGTGGAAAGTAGCACCCCTGCACAGAATGCAGACAAAGAGTCAGAGAGTCATAATAATGATAAAGATGATGTGTTTTCAGATGGCGAGGCAGAGCAATCTGCTTCTTCAAGAACCAAACAAACAAAAGCACCTTCTGAAGCAGTTGAAACAGTTAAAAAGGACACCAGAGGCTCCGACTCCAACAGAATTTCAAATCAAATTGCAAATTTATCGCATGCAACAGAACAAGTTTCCTTGGGAAACAAGAGCTCCTCCACGTCAATTCATCACGCTAGTGAGCCAAGAAGTAATGTTGACGGAAAAACAGTGTCCAGTTTCGAGGTGCCCAGCGCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTTTTTACCTTTGGAGATGATGAAGACTACGAAAGTGATTGA 1878 0.4255 MDSVPADVSNTHPIKDPPTSSPAKESDGQASAALVSEQDNSAHEAPSMLSPRGISSWTKSLKISQSFSGSQDDSSSGNAGKSTFARFTSNLGLRLSPKSPVEDDSSNETAAQSNLFGSITKGLVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLHRCPYWIRPSVTVSDHSGVLFSTKKHPRTKELLPEDFWFSAPKKGVMVFALPGEPGLTELSGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTGDLDGFDKRKLPSPGFMVEVVLVDYNGNVVTSQSETTTTKSDESASASPAGPAPVESSTPAQNADKESESHNNDKDDVFSDGEAEQSASSRTKQTKAPSEAVETVKKDTRGSDSNRISNQIANLSHATEQVSLGNKSSSTSIHHASEPRSNVDGKTVSSFEVPSAESEFKAMAADASVFTFGDDEDYESD* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02330 625 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 300 IPR000387 GO:0016311|GO:0016791
Lapu7g02330 625 MobiDBLite consensus disorder prediction 502 517 - -
Lapu7g02330 625 SMART PTEN_C2_2 331 459 IPR014020 -
Lapu7g02330 625 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 124 592 - -
Lapu7g02330 625 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
Lapu7g02330 625 MobiDBLite consensus disorder prediction 13 53 - -
Lapu7g02330 625 MobiDBLite consensus disorder prediction 1 53 - -
Lapu7g02330 625 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
Lapu7g02330 625 MobiDBLite consensus disorder prediction 468 501 - -
Lapu7g02330 625 MobiDBLite consensus disorder prediction 549 594 - -
Lapu7g02330 625 MobiDBLite consensus disorder prediction 518 534 - -
Lapu7g02330 625 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 132 329 - -
Lapu7g02330 625 CDD PTP_PTEN 157 321 IPR045101 GO:0016791
Lapu7g02330 625 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Lapu7g02330 625 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Lapu7g02330 625 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Lapu7g02330 625 MobiDBLite consensus disorder prediction 468 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02330 Lapu-Chr7 39526533 39534892 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02330 39 625 Protein tyrosine phosphatase (PTP) family AT3G19420 68.908 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02330 K01110 - gmx:100784003 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02330 7 39526533 39534892 Lapu7g02330 7 39526533 39534892 ECH
Lapu2g00536 2 4596197 4614622 Lapu7g02330 7 39526533 39534892 PCT