Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02329 ATGGCAATCCAGCACCACAATCACCAACTTCAACATAATGAGAATGTCTCATCTGTCCTTGACGCCCTTTACTGTGATGAAGCTAAGTGGGAGGATGAAGAGGGGGAGGAAGAAGAAGATGAGGAGAGTGATGTCACAACTAACCATGATGCCTATCGGCTGCACCACACTGCTGGAGCTTCTCTTTTCCCTCTGCTCTTGCTGGACCAAGACTTGTTCTGGGAAGACGAGGAACTGAACTCTCTCTTTTCCAAAGAGAAGCTTCAGCATGAACACGTTTATGGCTATAACAATCTGAACAGTGACGATAATAACAATAATGATGGTTGTGATAGTACTAATAATAATGTGCATTTGAACCCTTCTTTCTCTCAGCCTCGTCGTGAGGCAGTGGAATGGATGCTTAAAGTCAATGCGCACTACGGATTCTCTGCTCTCACTGCAACACTGGCCGTTACTTACCTGGATAGGTTCCTTCTAAGCTTCCATTTTCAAAGGGAGAAGCCTTGGATGATCCAGCTTGTGGCTGTCACTTGCATCTCTTTGGCTGCAAAAGTTGAAGAAACTCAAGTGCCTCTCCTCTTAGACCTTCAAGTGCAAGACACTAAGTATGTGTTTGAGGTAAAGACTATCCAGAGAATGGAGCTGCTGGTGCTGTCCACCCTCAAATGGAAGATGCATCCCGTGACCCCACTCTCGTTTCTAGATCACATTATAAGAAGGCTTGGATTGAAAACTCATCTTCACTGGGAGTTTCTCCGGCGCTGTGAGCATCTTCTTCTGTCTGTGCTTTTAGATTCGAGATTTGTTGGGTGCCTTCCTTCTGTTTTGGCCACTGCAACAATGCTGCATGTCATAGACCAGATTGAACACAGTGGTGGGATGGAATACAAAAATCAGCTTCTGAGTGTTCTCAAAATTAGCAAGGAGAAAGTAGATGAGTGTTATAATGCTATTCTCCAACGCTCAAATGCCAATAATTATGGTCATAACAACAACATTAACAAACGCAAGTATGAGCAAATTCCAGACAGCCCAAGTGGCGTAATTGATGCTGCATTTGGTTCTGATGGTTCCAACGATTCGTGGGCAGTGGGGTCATCATTATATTCATCACCAGAGCCTCTGTTCAAGAAGAGCAGAACCCAAGGACAACAAATGAAATTGTCACCACTTAATCGGGTGATTGTCGGAATTGTTGGCACCTCTCCTTGA 1215 0.4453 MAIQHHNHQLQHNENVSSVLDALYCDEAKWEDEEGEEEEDEESDVTTNHDAYRLHHTAGASLFPLLLLDQDLFWEDEELNSLFSKEKLQHEHVYGYNNLNSDDNNNNDGCDSTNNNVHLNPSFSQPRREAVEWMLKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEVKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCEHLLLSVLLDSRFVGCLPSVLATATMLHVIDQIEHSGGMEYKNQLLSVLKISKEKVDECYNAILQRSNANNYGHNNNINKRKYEQIPDSPSGVIDAAFGSDGSNDSWAVGSSLYSSPEPLFKKSRTQGQQMKLSPLNRVIVGIVGTSP* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02329 404 Pfam Cyclin, C-terminal domain 229 340 IPR004367 -
Lapu7g02329 404 PANTHER CYCLINS 78 328 IPR039361 -
Lapu7g02329 404 Pfam Cyclin, N-terminal domain 125 226 IPR006671 -
Lapu7g02329 404 SMART cyclin_7 132 220 IPR013763 -
Lapu7g02329 404 CDD CYCLIN_AtCycD-like_rpt1 127 224 - -
Lapu7g02329 404 FunFam CYCLIN D32 228 317 - -
Lapu7g02329 404 ProSitePatterns Cyclins signature. 127 158 IPR006671 -
Lapu7g02329 404 FunFam D3-type cyclin 120 227 - -
Lapu7g02329 404 Gene3D - 125 227 - -
Lapu7g02329 404 SMART Cyclin_C_2 229 358 IPR004367 -
Lapu7g02329 404 Gene3D - 228 319 - -
Lapu7g02329 404 CDD CYCLIN_AtCycD-like_rpt2 229 319 - -
Lapu7g02329 404 SUPERFAMILY Cyclin-like 230 340 IPR036915 -
Lapu7g02329 404 SUPERFAMILY Cyclin-like 122 227 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02329 Lapu-Chr7 39518237 39520719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02329 1 321 Core Cell Cycle Gene Families AT4G34160 53.894 2.58e-110 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02329 K14505 - gmx:547740 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02329 7 39518237 39520719 Lapu7g02329 7 39518237 39520719 ECH
Lapu9g02127 9 35992030 35994893 Lapu7g02329 7 39518237 39520719 ECH
Lapu2g00534 2 4585090 4587104 Lapu7g02329 7 39518237 39520719 PCT