Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02298 ATGACTTGCAATCGCTCAGAAATTCAACCTCTTCCCTCTGAGATCCGCTTCTTCAAGCCTATTCTGGATACTACTCTTCAACAAGGAAAGCTTGTGAGCATTCTTTCCGTCACCTCCTCTTTCTCTTTGTTCATTTTCATTTCCATTGAAACTTCTTTGACAGTGGCTAAAGAGTATCCAACTAAAAATATACGGAAAACGATATTGCCTGATAAACAAACCAGACAAAAGACAATGATGATTCCAAAGAAGTTCACTAAAAACTATGGTGTTAGTTTGTCAAACCCAGTGTTTCTCAAACTTCCAGATGGCATTGAATGGGAAATTTGTTGGACTAAAGATGGTGCTGGAGATGTTTGGTTTGAAAAGGGTTGGAAGGAATTTGTCACTTATTACGCCCTTGGCTACGGTCATCTTGTGGTATTCAAGTACCAACAAACATGTAAATTGGAAGTACACATATTCGATGGAAGTGCCGTTGAAATAAATTATCCCTCCAACAGAACTCAAAACCATTCCGCTAAAGTTTCCTCAGAGGCAACTCCAACAACGTCATCACGTCCTGGACCTTCTAAAAAACTAAGGACACACTCAAGTGGAGTTGTTGGACAAATCTCCAATTTGCCTCAGCACGTTCAAATTGAAGTTGATCAGTCTCAAGAGAACTGCAGTGGTGCCACCAGATCTGAAACTCCCTCTTTTATGGTTGTCATGAAGGATACATATGTGAAAGGATATATCCTGGTCATTCCATCAGTATTTACTAAAAAGTATTTGAAGGAAAAGGGAAAGCATGATATCCTCCTTCGGGTCTTGGATGGGAGAACTTGGCTTGTTATATTAAAGAATGGCAAATTTTACACAGGATGGAAGGATTTTGCATCAGATAACCGTTTGAACGTTGGAGACATTTGTATTTTTGAGCTAACCGAGAGCCATGAAGGCCTGTGTTTTGAAGTCTCAATAATTCCCATTTCGACAAATAAATGTTCGAGTTCACAAGTTCAAGGAGATGGTGTCCTTATGAAAATTCCAGATTTGAAATGTATCAATACTATTCCCATCAAAGGGTTCATCCTAAAGTCATGTGGTTTTGTTGTCATGTCATTCACAAATGGAGCTATGCAAGAAGCAGAAAATTTCACCTCTGAAAATCCCTTTTTCAAGATCACTATAAGGGCAAATCATAGGGGAGATTGCAGACAGCGTGCACCACTTGCGTTTGTGAGAAAGTACTTCCACAAGAAGCAGAGTTTGATGCTCCAGTTTGGAAGTAAATCGTGGCGGGTACAACTGATTGGTGCAATTCCAACAAAGCTGTCCAACGGTTGGACACAATTTGCGAAGGAATGCAAGTTGCAAGCTGGAAATGTCTGCGTCTTCGAGTTGATTAACGAAGAAGATGCACTGCTGAATGTTCACATTTTTAGAGGCTAA 1437 0.4001 MTCNRSEIQPLPSEIRFFKPILDTTLQQGKLVSILSVTSSFSLFIFISIETSLTVAKEYPTKNIRKTILPDKQTRQKTMMIPKKFTKNYGVSLSNPVFLKLPDGIEWEICWTKDGAGDVWFEKGWKEFVTYYALGYGHLVVFKYQQTCKLEVHIFDGSAVEINYPSNRTQNHSAKVSSEATPTTSSRPGPSKKLRTHSSGVVGQISNLPQHVQIEVDQSQENCSGATRSETPSFMVVMKDTYVKGYILVIPSVFTKKYLKEKGKHDILLRVLDGRTWLVILKNGKFYTGWKDFASDNRLNVGDICIFELTESHEGLCFEVSIIPISTNKCSSSQVQGDGVLMKIPDLKCINTIPIKGFILKSCGFVVMSFTNGAMQEAENFTSENPFFKITIRANHRGDCRQRAPLAFVRKYFHKKQSLMLQFGSKSWRVQLIGAIPTKLSNGWTQFAKECKLQAGNVCVFELINEEDALLNVHIFRG* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02298 478 SUPERFAMILY DNA-binding pseudobarrel domain 381 477 IPR015300 -
Lapu7g02298 478 SUPERFAMILY DNA-binding pseudobarrel domain 228 323 IPR015300 -
Lapu7g02298 478 ProSiteProfiles B3 DNA-binding domain profile. 64 158 IPR003340 GO:0003677
Lapu7g02298 478 CDD B3_DNA 232 324 IPR003340 GO:0003677
Lapu7g02298 478 ProSiteProfiles B3 DNA-binding domain profile. 233 326 IPR003340 GO:0003677
Lapu7g02298 478 PANTHER B3 DOMAIN-CONTAINING 228 474 - -
Lapu7g02298 478 ProSiteProfiles B3 DNA-binding domain profile. 387 478 IPR003340 GO:0003677
Lapu7g02298 478 SUPERFAMILY DNA-binding pseudobarrel domain 66 157 IPR015300 -
Lapu7g02298 478 Gene3D - 215 326 IPR015300 -
Lapu7g02298 478 Gene3D - 368 478 IPR015300 -
Lapu7g02298 478 MobiDBLite consensus disorder prediction 166 196 - -
Lapu7g02298 478 Pfam B3 DNA binding domain 234 318 IPR003340 GO:0003677
Lapu7g02298 478 Pfam B3 DNA binding domain 387 477 IPR003340 GO:0003677
Lapu7g02298 478 Pfam B3 DNA binding domain 66 157 IPR003340 GO:0003677
Lapu7g02298 478 SMART B3_2 387 478 IPR003340 GO:0003677
Lapu7g02298 478 SMART B3_2 64 158 IPR003340 GO:0003677
Lapu7g02298 478 SMART B3_2 234 326 IPR003340 GO:0003677
Lapu7g02298 478 Gene3D - 58 159 IPR015300 -
Lapu7g02298 478 CDD B3_DNA 387 477 IPR003340 GO:0003677
Lapu7g02298 478 CDD B3_DNA 64 156 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02298 Lapu-Chr7 39253251 39255497 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02298 58 165 B3 DNA Binding Superfamily AT4G01580 37.037 3.99e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu7g02298 B3 2.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02298 - - var:108325311 550.051