Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02272 ATGGCTTTGGAGGCTTTGAATTCTCCAACAGCAGCCGCCACTCCCTTCCGCGGCTACCAAGAAGAGGACGAGGTTGACCTTCAGTTCCGCGAGCCTTGGTCTAAGAGAAAACGCTCCAAGCGACCGCGTTTTGAGACCGAGGAAGAGTACCTCGCTCTTTGCCTCATCATGCTCGCACAAGGCGGCAACAACACCAACACCAACACCAACACTTCTTCTCACCGCCAAACTCAACACTCTCAGAAAGAACCGTCACCGCCGCTGAAATTATCTCACAGGTGCACCGTTTGCAACAAGGCCTTTCCTTCTTATCAAGCGCTCGGTGGACACAAGGCCAGCCACCGCAAGTCCTCGTCCGAATCCACCGCCGTCTCCACCGCGGCCAACGACAGCGTTTCCGCTTCCACCGTCGGCGGCGCTGGAAGGATGCACGAGTGTTCCATCTGTCACAAGAGTTTCCCCACCGGACAGGCCCTGGGTGGCCACAAGCGCTGCCACTACGACGGCGGCAACCACCACAGTAACAGCAACGTCAACGGCAACAACAGCAGCGCCGTCACTTCCTCCTCCGACGGCGTTGGCGGCGGTGCTGCCTCTTCCCACACGCTCCGTGGGTTTGACCTGAACCTGCCGGCGCCGCTGACGGAGTTCTGGCCGCCCGTGGGGTTCGACTTCAGGAAGAAGGTCGGTGGAGGCGGCGAGGAAGAGGTGGAAAGCCCGTTGCCAGTAACCGCCACCAAGAGAGCGCGTTTGTTTTCAAGGGAGGACCATGATGATGATGAAGCGGCATAG 792 0.5922 MALEALNSPTAAATPFRGYQEEDEVDLQFREPWSKRKRSKRPRFETEEEYLALCLIMLAQGGNNTNTNTNTSSHRQTQHSQKEPSPPLKLSHRCTVCNKAFPSYQALGGHKASHRKSSSESTAVSTAANDSVSASTVGGAGRMHECSICHKSFPTGQALGGHKRCHYDGGNHHSNSNVNGNNSSAVTSSSDGVGGGAASSHTLRGFDLNLPAPLTEFWPPVGFDFRKKVGGGGEEEVESPLPVTATKRARLFSREDHDDDEAA* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02272 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Lapu7g02272 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 166 IPR013087 -
Lapu7g02272 263 Pfam C2H2-type zinc finger 92 116 - -
Lapu7g02272 263 Pfam C2H2-type zinc finger 144 168 - -
Lapu7g02272 263 MobiDBLite consensus disorder prediction 249 263 - -
Lapu7g02272 263 MobiDBLite consensus disorder prediction 63 85 - -
Lapu7g02272 263 MobiDBLite consensus disorder prediction 19 43 - -
Lapu7g02272 263 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 37 212 IPR044653 GO:0003700
Lapu7g02272 263 SMART c2h2final6 144 166 IPR013087 -
Lapu7g02272 263 SMART c2h2final6 92 114 IPR013087 -
Lapu7g02272 263 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Lapu7g02272 263 MobiDBLite consensus disorder prediction 229 263 - -
Lapu7g02272 263 MobiDBLite consensus disorder prediction 63 89 - -
Lapu7g02272 263 MobiDBLite consensus disorder prediction 108 137 - -
Lapu7g02272 263 MobiDBLite consensus disorder prediction 1 43 - -
Lapu7g02272 263 SUPERFAMILY beta-beta-alpha zinc fingers 92 166 IPR036236 -
Lapu7g02272 263 Gene3D Classic Zinc Finger 90 166 - -
Lapu7g02272 263 MobiDBLite consensus disorder prediction 172 196 - -
Lapu7g02272 263 MobiDBLite consensus disorder prediction 118 136 - -
Lapu7g02272 263 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02272 Lapu-Chr7 39078566 39079756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02272 1 256 C2H2 Transcription Factor Family AT3G19580 41.438 1.07e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g02272 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02272 - - vum:124819975 391.734