Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02270 ATGGCATCTGTGGTGGCCGCCGCCACGGGGCAAGAGTTGTCGAATCCTCCCTCGGACGGCATAACCAATCTCCGATTTTCAAATCACAGCGATCATCTCTTGGTCTCCTCATGGGACAAGAGTGTGAGGTTGTATGATGCGAGCGCCAATGTATTGAGAGGAGAGTTCATGCACGCTGGCCCCGTTCTTGACTGCTGCTTCCACGACGATTCCTCCGGCTTCAGTGTCGCCGCCGACAACACTGTTAGACGGCTTGTCTTCAGTTCTAATAAAGAGGATATCCTTGGAAGGCATGATGCCCCTGTTCGTTGTGCTGAGTACTCGTATGCTGCAGGTCAATTGATCACTGGTAGTTGGGACAAAACCCTGAAATGTTGGGATCCTAGAGGTGCAAGTGGCCAAGAGCGAACACTCGTTGGGACATATCCACAGCCTGAGCGTGTTTACTCTCTCTCTCTGGTTGGTAATCGCCTGGTTGTGGCTACTGCTGGAAGACATGTTAATATCTATGATTTGAGAAACATGTCTCAACCTGAGCAGAAAAGAGAATCTTCATTGAAATATCAAACCAGATGTGTGCGCTGTTACCCAAATGGAACAGGATATGCACTTAGTTCTGTTGAAGGGCGTGTTGCCATGGAATTTTTTGACCTCTCAGAAGCTATTCAGGCAAAAAAATATGCTTTCAAGTGTCACAGAAGATCCGAGGCTGGAAGGGACATCGTCTATCCTGTAAATGCCATTGCATACCACCCCATATATGGAACCTTTGCCACAGGTGGTTGTGACGGGTATGTTAACGTGTGGGACGGAAACAATAAGAAGAGGCTATACCAGTACTCAAAATATCCTACTAGCATTGCTGCACTGTCGTTTAGCAGAGATGGACGCCTCTTGGCTGTTGCATCAAGTTACACATTCGAAGAAGGACCCAAAACAGGACCTAAAATCTTCGAACCAGATGCCATCTACGTTCGAAGTGTAAACGAGATTGAGGTCAAGCCGAAGCCCAAAGTCTATCCCAATCCTCCTGCGTAA 1038 0.4778 MASVVAAATGQELSNPPSDGITNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHAGPVLDCCFHDDSSGFSVAADNTVRRLVFSSNKEDILGRHDAPVRCAEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQKRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAIQAKKYAFKCHRRSEAGRDIVYPVNAIAYHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGPKTGPKIFEPDAIYVRSVNEIEVKPKPKVYPNPPA* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02270 345 FunFam Mitotic checkpoint protein bub3, putative 6 338 - -
Lapu7g02270 345 Gene3D - 7 339 IPR015943 GO:0005515
Lapu7g02270 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515
Lapu7g02270 345 SUPERFAMILY WD40 repeat-like 16 304 IPR036322 GO:0005515
Lapu7g02270 345 PANTHER MRNA EXPORT FACTOR AND BUB3 11 330 - -
Lapu7g02270 345 SMART WD40_4 49 86 IPR001680 GO:0005515
Lapu7g02270 345 SMART WD40_4 9 46 IPR001680 GO:0005515
Lapu7g02270 345 SMART WD40_4 228 270 IPR001680 GO:0005515
Lapu7g02270 345 SMART WD40_4 88 127 IPR001680 GO:0005515
Lapu7g02270 345 SMART WD40_4 135 171 IPR001680 GO:0005515
Lapu7g02270 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Lapu7g02270 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Lapu7g02270 345 Pfam WD domain, G-beta repeat 19 46 IPR001680 GO:0005515
Lapu7g02270 345 Pfam WD domain, G-beta repeat 96 127 IPR001680 GO:0005515
Lapu7g02270 345 Pfam WD domain, G-beta repeat 236 270 IPR001680 GO:0005515
Lapu7g02270 345 PRINTS G protein beta WD-40 repeat signature 114 128 IPR020472 -
Lapu7g02270 345 PRINTS G protein beta WD-40 repeat signature 33 47 IPR020472 -
Lapu7g02270 345 PRINTS G protein beta WD-40 repeat signature 257 271 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02270 Lapu-Chr7 39064712 39068075 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02270 75 303 U-box Gene Family AT2G33340 23.504 2.74e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02270 K02180 - gmx:100820541 641.728