Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02258 ATGGCCAGTTTCGGAGGAACCACACAAAAGTGCATGGCTTGTGACAAAACTGTCTACCTTGTTGATAAGCTTACAGCTGATGGCCGTATCTATCACAAGGCCTGCTTCAGATGTCACCATTGCCGCAGTACCCTTAAGCTTAGCAACTACTGCTCTTTTGAAGGGGTGCTATACTGCAGACCTCATTATGATCAGCTCTACAAGCGAACTGGCAGCCTGGACAAAAGCTTCGAAGGAACACCCAAAGTTCAGAAACCAGAGAAACAGGTCAATGAAAATGAGCAGAGCTCTAAAGGCCTCGCAAACGTGTTCTTGGGTACCAGAGACAAATGTGTGTGTTGCAAAAAGACAGTGTATCCCACTGAGAGGGTAACGATTAATGGGATACCCTACCATAAGGGCTGCTTCAAATGTACCTATGGAGGTTGTACTATAAGCTCATCAAACTTTATCACACACGAGGGAAAGCTCTACTGCAAACACCATCACATTCAACTTTTCAAGGAGAAGGGTAATTACAGTCAGCTCGAGAATGACCAAGTTTCAACCACGGAAATCGCTTCTTGA 567 0.4515 MASFGGTTQKCMACDKTVYLVDKLTADGRIYHKACFRCHHCRSTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKVQKPEKQVNENEQSSKGLANVFLGTRDKCVCCKKTVYPTERVTINGIPYHKGCFKCTYGGCTISSSNFITHEGKLYCKHHHIQLFKEKGNYSQLENDQVSTTEIAS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02258 188 CDD LIM1_SF3 7 69 - -
Lapu7g02258 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 136 - -
Lapu7g02258 188 Gene3D Cysteine Rich Protein 6 75 - -
Lapu7g02258 188 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Lapu7g02258 188 FunFam LIM domain and actin-binding 1 105 175 - -
Lapu7g02258 188 PANTHER OS06G0237300 PROTEIN 2 94 - -
Lapu7g02258 188 Pfam LIM domain 11 65 IPR001781 -
Lapu7g02258 188 Pfam LIM domain 111 166 IPR001781 -
Lapu7g02258 188 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Lapu7g02258 188 Gene3D Cysteine Rich Protein 105 173 - -
Lapu7g02258 188 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Lapu7g02258 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Lapu7g02258 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Lapu7g02258 188 SMART lim_4 10 62 IPR001781 -
Lapu7g02258 188 SMART lim_4 110 162 IPR001781 -
Lapu7g02258 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 176 - -
Lapu7g02258 188 FunFam LIM domain and actin-binding 1 5 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02258 Lapu-Chr7 38947155 38948845 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lapu7g02258 LIM 5.5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02258 K09377 - gmx:100306027 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02258 7 38947155 38948845 Lapu7g02258 7 38947155 38948845 ECH