Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02246 ATGTCTTCAGACACAAAGAAAAGTCGTGGCCGCCAAAAGATCGAGATGAAGAAAATGAGCAACGAGAGCAACCTCCAGGTCACCTTCTCCAAGCGCCGTACTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGCTGCTGATGTGGCACTTGTTGTGTTCTCCCCCGGAGAGAAGGTTTTCTCCTTCGGTCACCCTAACGTGGACGCTGTGATTGACCGCTACCTGGCGCGGGTACCACCACAGGACACGGGCACCATGCAGTTCATTGAGGCTCATCGCCTGGCCAATGTGCGTGACCTTAACGCGCAGCTCACTCAGATCAACTCCCAATTGGACGCCGGAAGGCAGCACGGGGAGGAGCTGAACCGCATGAAGAAGGACTCCCAAGCCCAGCTATGGTGGGCCCAGCCCATAGATAAAATGAGTCCAGCCCAGATGGAGCAGTACAGGGCGGCCTTGGAGGAACTGAAGAAAGTGGTTGCGCGTCTTTCTGATAGGGCCATGCTTCAGAGTGCCACAAACCAGGCTCGTCAGTTTTTTCCTGGGGCTCCTTCCTCTTCCAATCTGGTGCATCACCCTCAGCCACCTCCGGTGTTCCCCCAACAGCTGATTCAACCACCCATGGTTCAAAACTTCTTGTTCCCTGATGGAACCATCGCAAGCCACCATGGGTTTAATCACATGGAAATGGGAGGATATGCACCTGGACCTGGACCTGCTGGTGCTTTCTTTTGA 744 0.5457 MSSDTKKSRGRQKIEMKKMSNESNLQVTFSKRRTGLFKKASELCTLCAADVALVVFSPGEKVFSFGHPNVDAVIDRYLARVPPQDTGTMQFIEAHRLANVRDLNAQLTQINSQLDAGRQHGEELNRMKKDSQAQLWWAQPIDKMSPAQMEQYRAALEELKKVVARLSDRAMLQSATNQARQFFPGAPSSSNLVHHPQPPPVFPQQLIQPPMVQNFLFPDGTIASHHGFNHMEMGGYAPGPGPAGAFF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02246 247 Gene3D - 88 183 - -
Lapu7g02246 247 Coils Coil 149 169 - -
Lapu7g02246 247 MobiDBLite consensus disorder prediction 1 22 - -
Lapu7g02246 247 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Lapu7g02246 247 PANTHER MADS BOX PROTEIN 11 165 - -
Lapu7g02246 247 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677|GO:0046983
Lapu7g02246 247 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Lapu7g02246 247 Gene3D - 21 87 IPR036879 GO:0003677|GO:0046983
Lapu7g02246 247 MobiDBLite consensus disorder prediction 1 18 - -
Lapu7g02246 247 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Lapu7g02246 247 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Lapu7g02246 247 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Lapu7g02246 247 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Lapu7g02246 247 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Lapu7g02246 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02246 Lapu-Chr7 38796149 38796892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02246 5 190 Type I MADS-box Gene Family AT5G60440 51.852 4.67e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu7g02246 SRF-TF 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02246 - - gmx:100794751 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02246 7 38796149 38796892 Lapu7g02246 7 38796149 38796892 ECH