Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02245 ATGGATTCAGGAGCAAAGAAAAGCCGTGGTCGCCAAAAGATCGAGATGAAGAAAATGAGCAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGCCGAAGCGGGCTTTTCAAGAAGGCGAGTGAGCTCTGCACCCTCTGCGGGGCCCACGTCGCGCTGGTGGTCTTCTCGCCCGGCGAGAAGGTGTTCTCCTTCGGCCACCCCAACGTGGACTCCGTGATCGACCGCTTTCTGGGACGGGCCCCGGTGCAGGACTCCGGTACCATGCAGTTCATCGACGCACACCGCATCTCCAACGTGCGTGACCTGAACAAGCAGCTGACTCAGGTGAACGAACTTCTGGAAACGGAGAGGAAGCGCGGCGAGGAGCTGAGCCGGTTGAGGAAGGAGGCGCAGGAGCAGATGTGGTGGACCCGCCCCACTGAGGAGCTGAGTGTGGAGCAGATGGAGCAGTACAAGGCGGCATTGGAGGAGCTGAAGAAGCACGTTGCGCAACTTGCTGAGAGGGCTATGCTTCAGAGTGCTGTAAATCAGGGTCATCAGTTTTTCCCCGGGGGTTCTTCCTCTGCCAATTTCGTGCCTCAGCCTCAGCTTCAGCCACAGCCTCCTCAGGTGTTCACTGCACAGACCATTCCTACCATGCTTCAGAACTATATGTTCCCAGATGTAACCATCATGCAGCAGCAGCATCACGGGTTCGACAACATGGGGATGGGAGGATATGGACCTGGACCTGCTCCTGCTGGTGGTTTTTTCTGA 759 0.5705 MDSGAKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAHVALVVFSPGEKVFSFGHPNVDSVIDRFLGRAPVQDSGTMQFIDAHRISNVRDLNKQLTQVNELLETERKRGEELSRLRKEAQEQMWWTRPTEELSVEQMEQYKAALEELKKHVAQLAERAMLQSAVNQGHQFFPGGSSSANFVPQPQLQPQPPQVFTAQTIPTMLQNYMFPDVTIMQQQHHGFDNMGMGGYGPGPAPAGGFF* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02245 252 PANTHER MADS BOX PROTEIN 11 166 - -
Lapu7g02245 252 Coils Coil 97 134 - -
Lapu7g02245 252 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Lapu7g02245 252 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Lapu7g02245 252 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Lapu7g02245 252 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Lapu7g02245 252 Coils Coil 142 169 - -
Lapu7g02245 252 Gene3D - 89 181 - -
Lapu7g02245 252 SUPERFAMILY SRF-like 10 83 IPR036879 GO:0003677|GO:0046983
Lapu7g02245 252 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Lapu7g02245 252 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Lapu7g02245 252 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Lapu7g02245 252 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Lapu7g02245 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02245 Lapu-Chr7 38783555 38784484 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02245 5 189 Type I MADS-box Gene Family AT5G60440 57.979 1.99e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu7g02245 SRF-TF 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02245 - - pvu:PHAVU_007G047900g 444.506