LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu7g02225	ATGTTTTGGCGCAACATGTCCCTCTCCGTTTCCAACAACCATCTTACCTTTTTTCTGTTCCTGTCTCTGTTCGGAATTGAACCGTTTTGTTCCTCTGGAGCTCCGGTTTACAATTACTGCCCAAGCAACGGATCCTACAATTCCAGCGTAACGTTCGAAACCAATCTCAGAATCCTCCTCGAATCTCTCGTCTCCAACATTTCCCAATCCGACGGCTCCTATGCCTCCGCCATGGGCTTGGGGACCACAAGCGTCGCCAGCGGCTATTTCCTCTGCCGCGGCGACGTCTCCCTCGCCACGTGTAACGACTGCATCACCACCGCCGCCACCGAAATAACACAACTCTGCCCTAACAAAACAGAGTCCATAATATGGTACGACGAGTGCACGCTCCGTTTCACCAACACCTACTTCACCCCCACCGGCCCCGAACCGGGAGCCAGCTTATCGAACGATACAAACATCTCCGCCTCCGACTTAGACAGCTTCAACCGCACGTTGTTCGGCTTGTTGGACGATTTGGTGGAAGAGACTGCGAGTTCTAACTCGGCGAGGAAATTCGCCACCGGCGATAGAGAATTCGCCGGATCCTCGCCGCAGAGAACGGTGTACGCCCTGACGGAGTGCGAGCCGGACTTAACGAATAATCAGTGTGAAGAGTGTTTGCAAAACGCCATTTCAACTCTTCCGTCGTGCTGCGAAGGAAAACAGGGCGCGAGGGCTCTGCTTGCGTGGTGCAACGTTAGATACGAATTGTATCAGTTTTACAATACGAGCGCCACGTCAGCATCCTCATCAGGAAATAACAATCGTGTATTTCGAGTAATCTTCATTGTTGCCCTTGTTATTGTGTCGATAATTCTCTTATGTGGTGTCTGCTATTTCATATTCAAAAGATCAAGGAAGAAACACAACACTCTTCTAAGGGAAAATTTTGGGGAAGAAAGTTCCACTTTGGAATCGTTACAATTTGATTTGGCCACAATTGAAGTCGCCACGAAGAAGTTTTCGCATGAAAACAGGATAGGCGAAGGTGGATTTGGAGATGTTTATAAGGGTATCCTTCCGGATGGACGAGAAATAGCAGTTAAAAAACTTTCACATAGTTCAGGCCAAGGTGCAGCAGAATTCAAGAATGAGATTTTATTAATAGCAAAACTTCAACATAGAAATTTAGTCACATTGTTAGGATTTTGTTTGGAAGCTCAAGAAAAAATGCTTATTTATGAATTTGTGCCTAATAAAGGCCTGGACTACTTTCTATTTGATCCTTACAAAAGTAGTCAAATGAATTGGTCGGTACGTTATAAAATTATTGAAGGAATCTCCCAAGGAATTTTATATTTACATGAACATTCACGTTTAAAAGTAATACATCGTGATCTAAAACCTAGTAATGTATTACTAGATAACAATATGAATCCAAAGATATCAGATTTTGGAATGGCAAGAATTGTTGTTATAGATCAATATCAAGAAAAAACAAGTAGAATCATGGGAACATATGGATATATGTCACCGGAATATGCAATGCATGGACACTATTCAGAGAAATCAGATATTTTTAGTTTTGGAGTTATAATGCTAGAAATAGTTAGCTCAAAAAAGAACTCCAGATATGTTTTCTCGGATCACGATGACCTCTTGAGCTACGCTTGGGATCAATGGAGGTATCAGACACCATTAAACATATTAGACCAAAATATTAAAGAATCTTGCAATCACAGTGAAGTCATAAAATGCATCCAAATAGGTTTATTATGTGTACAAGAGAAGTCACAGGACAGACCTACAATTGCACAAGTTGTTTCATATCTCAGTAGCTCTTTATCTGAGTTGCCATTTCCTGAAAAACCCATTAATTCTAATCAAAGTGGAATAGTTCAAAGGATGGTAATAGGAGGATCCAGTTCAGGTTCTGCACTATCAGCAAATGAAATGTCTGTGAGCACATTTATCCCTCGGTAG	1968	0.4223	MFWRNMSLSVSNNHLTFFLFLSLFGIEPFCSSGAPVYNYCPSNGSYNSSVTFETNLRILLESLVSNISQSDGSYASAMGLGTTSVASGYFLCRGDVSLATCNDCITTAATEITQLCPNKTESIIWYDECTLRFTNTYFTPTGPEPGASLSNDTNISASDLDSFNRTLFGLLDDLVEETASSNSARKFATGDREFAGSSPQRTVYALTECEPDLTNNQCEECLQNAISTLPSCCEGKQGARALLAWCNVRYELYQFYNTSATSASSSGNNNRVFRVIFIVALVIVSIILLCGVCYFIFKRSRKKHNTLLRENFGEESSTLESLQFDLATIEVATKKFSHENRIGEGGFGDVYKGILPDGREIAVKKLSHSSGQGAAEFKNEILLIAKLQHRNLVTLLGFCLEAQEKMLIYEFVPNKGLDYFLFDPYKSSQMNWSVRYKIIEGISQGILYLHEHSRLKVIHRDLKPSNVLLDNNMNPKISDFGMARIVVIDQYQEKTSRIMGTYGYMSPEYAMHGHYSEKSDIFSFGVIMLEIVSSKKNSRYVFSDHDDLLSYAWDQWRYQTPLNILDQNIKESCNHSEVIKCIQIGLLCVQEKSQDRPTIAQVVSYLSSSLSELPFPEKPINSNQSGIVQRMVIGGSSSGSALSANEMSVSTFIPR*	656

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu7g02225	655	Pfam	Protein tyrosine and serine/threonine kinase	339	606	IPR001245	GO:0004672\|GO:0006468
	Lapu7g02225	655	Gene3D	Transferase(Phosphotransferase) domain 1	413	618	-	-
	Lapu7g02225	655	Gene3D	-	147	255	IPR038408	-
	Lapu7g02225	655	Gene3D	-	33	138	IPR038408	-
	Lapu7g02225	655	ProSiteProfiles	Gnk2-homologous domain profile.	34	138	IPR002902	-
	Lapu7g02225	655	ProSiteProfiles	Protein kinase domain profile.	336	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu7g02225	655	ProSiteProfiles	Gnk2-homologous domain profile.	143	255	IPR002902	-
	Lapu7g02225	655	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	457	469	IPR008271	GO:0004672\|GO:0006468
	Lapu7g02225	655	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	298	411	-	-
	Lapu7g02225	655	Pfam	Salt stress response/antifungal	40	135	IPR002902	-
	Lapu7g02225	655	Pfam	Salt stress response/antifungal	158	253	IPR002902	-
	Lapu7g02225	655	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	42	649	-	-
	Lapu7g02225	655	FunFam	cysteine-rich receptor-like protein kinase 10	412	613	-	-
	Lapu7g02225	655	SMART	serkin_6	336	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu7g02225	655	FunFam	Cysteine-rich receptor-like protein kinase 11	147	255	-	-
	Lapu7g02225	655	CDD	STKc_IRAK	342	603	-	-
	Lapu7g02225	655	ProSitePatterns	Protein kinases ATP-binding region signature.	342	365	IPR017441	GO:0005524
	Lapu7g02225	655	SUPERFAMILY	Protein kinase-like (PK-like)	319	620	IPR011009	-
	Lapu7g02225	655	Gene3D	Phosphorylase Kinase; domain 1	297	411	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu7g02225	Lapu-Chr7	38649998	38653674	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu7g02225	15	655	Receptor kinase-like Gene Family	AT4G05200	42.815	0.0	540

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lapu7g02225		PK_Tyr_Ser-Thr	9.6e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu7g02225	-		-	var:108324781	1103.2