Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02201 ATGGAAGTTCCTCCTTCCTGTGATGACCAGGATCCCGACAAACAAACCAGAAGGAAGCGCTATCATCGTCATTCACATGAACAGATATCGGAGATGGAATCTTTCTTTAAAGAGTGTCCTCACCCAGATGAGAGACAAAGGAGAGAGCTGAGCCTTGAACTCGGATTGGATGCCATGCAGGTCAAGTTCTGGTTCCAAAACAAGCGTACCCAAGTTAAGTCTCAACATGAACGCCATGAGAACAATCTTTTAAAGGCTGAGAATGACAAGCTTCGTGCAGAGAACATTAGGTACAAGGAGGCACTAGGTAATGCTTCATGCCCTAGCTGTGGAGGCCCCACTTCTCTAGGAGAAATGTGTTTTGACGAGCAACAGATAAGGGTCGAGAACACACGATTAAGAGAAGAGATCGAAAAGATGTCAGCAATGGTAGCCAAATTTGGTGGAAAACCTGGGAGTTCCTACCATAGCATGCCATCTGAAAACCAGATGATGCCTCCTCGGTCTCTTGATCAAGGAGTTGGAAACTATGGAGCACAGACAGTGATGATAGGGGAAATGTTTGGTGGCAATAATGAACTTGGGATGCTCCCAATTAGTAATGATTTTGAGAAAGACATCGTTATGGAGATTGGTAATGTAGCAATGAAGGAAGTCACAAAGCTGGCTGGGGCTGGAAACAATTTGTGGCTCCCTGGAAGCTGTGGCTGTGAGATTCTGAATCAAGATGAATATCTGAGGTCTTTCCCAAAGGGAATAGGTCCAACACCCTTGGGTATAAAAATCGAAGCTTCAAGGCATTCCGCAGTAGTCATCATGGATTACAATAAACTAGTTGAGATCTTTATGGATGTGAATCAATGGGCAAACATGTTTTGCGGCATCATTTCAAAGGCAGCTTTACACCAAGTTCTCGAAATTGGTCAAACAGAAATCTACGATGGAGCCGCTCAAGTGATGTCAGCTGAGTTCCAACTCCCTTCACCGCTTGTTCCTATTCGTGACGACTATTTCGTGAGGTTGTGTAAGAGGAAAAGTTTAGAATCATGGACTATTGTTGATTTTTCCGTGGATAATCTGCGACCTAGTTCATTCACAAAAAGTCGAAGACGGCCCTCTGGTTGCGTGATCACAGAATTGCCAAATGGTTACTCAAAGATTGTTTGGATTGAACATGTAGAACTGGAAGACAATGAAGTGCACAATCTTTACAAAAGCTATGTTAATTCTGGCCTAGCCTTTGGAGCTAAACGCTGGGTGGCATCCTTAGATAGACAATGCGAACGTCTCACAAGTGCAATGGCCTCCAACATACCCCACGAGAGCATTGGTTTGCTCACAAATTGTGGGGGACGAAGAAGCATGATGAGGCTGGCTGAGAGAATGATGTTGAGCTTTTGTACTGCTGTTGGTGCTTCTACTGCAAATGCTTGGACACTACTAACAGCTGCCGGTGAAGATGTAAGGGTCATGATCAGAAAAAGTGTGGATGATCCAGGCAGACCTTCCGGTATTGTGCTCAGTGCTGCAACTTCTTTGTGGCTCCCAGTTACTTCAAGGACCGTTTTTGATTTTCTGCGATCTGAAAACTCAAGAAATCAGTGGGACATTCTCTCTAACGGAGGACAAGTGAAAAAATTGGCACACATTGCCAATGGTCAAGATACTGGCAACTGTGTCTCCTTGCTTCGATTCAAAACTCAGAATTCTGGCCAAAGCAATATGATCATACTTCAAGAGAGTTGCACTGATGCTACAGCCTCGTTCATTGTATATGCTCCTGTTGATTTAGTTTCCATGAATGTTGTGTTGAGAGGTGGAAATCCTGATTGTATTGCCCTGCTGCCCTCGGGCTTTGCTGTTCTTCCTGATGGACCTGAACAGATGAACAATGGTGGACCCATTGGTGAGGTTGGATCTGGAGGTTCCCTTCTAACAGTGGCATTTCAGATATTGGTTGATTCTGCTCCAACTTCAAAACTCTCTGCTAGTTCAGTGACTACTGTTAGCAGTTTAATCAAGTGCACAGTTCAGCGTATCCAAGCTGCAGTG 2052 0.4449 MEVPPSCDDQDPDKQTRRKRYHRHSHEQISEMESFFKECPHPDERQRRELSLELGLDAMQVKFWFQNKRTQVKSQHERHENNLLKAENDKLRAENIRYKEALGNASCPSCGGPTSLGEMCFDEQQIRVENTRLREEIEKMSAMVAKFGGKPGSSYHSMPSENQMMPPRSLDQGVGNYGAQTVMIGEMFGGNNELGMLPISNDFEKDIVMEIGNVAMKEVTKLAGAGNNLWLPGSCGCEILNQDEYLRSFPKGIGPTPLGIKIEASRHSAVVIMDYNKLVEIFMDVNQWANMFCGIISKAALHQVLEIGQTEIYDGAAQVMSAEFQLPSPLVPIRDDYFVRLCKRKSLESWTIVDFSVDNLRPSSFTKSRRRPSGCVITELPNGYSKIVWIEHVELEDNEVHNLYKSYVNSGLAFGAKRWVASLDRQCERLTSAMASNIPHESIGLLTNCGGRRSMMRLAERMMLSFCTAVGASTANAWTLLTAAGEDVRVMIRKSVDDPGRPSGIVLSAATSLWLPVTSRTVFDFLRSENSRNQWDILSNGGQVKKLAHIANGQDTGNCVSLLRFKTQNSGQSNMIILQESCTDATASFIVYAPVDLVSMNVVLRGGNPDCIALLPSGFAVLPDGPEQMNNGGPIGEVGSGGSLLTVAFQILVDSAPTSKLSASSVTTVSSLIKCTVQRIQAAV 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02201 684 SMART HOX_1 16 79 IPR001356 GO:0003677
Lapu7g02201 684 CDD homeodomain 17 76 IPR001356 GO:0003677
Lapu7g02201 684 FunFam Homeobox-leucine zipper protein HDG1 6 91 - -
Lapu7g02201 684 SUPERFAMILY Bet v1-like 201 430 - -
Lapu7g02201 684 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Lapu7g02201 684 SUPERFAMILY Homeodomain-like 11 81 IPR009057 -
Lapu7g02201 684 SMART START_1 210 429 IPR002913 GO:0008289
Lapu7g02201 684 CDD START_ArGLABRA2_like 205 428 - -
Lapu7g02201 684 MobiDBLite consensus disorder prediction 1 27 - -
Lapu7g02201 684 ProSiteProfiles START domain profile. 201 432 IPR002913 GO:0008289
Lapu7g02201 684 SUPERFAMILY Bet v1-like 452 681 - -
Lapu7g02201 684 Gene3D - 6 91 - -
Lapu7g02201 684 Pfam START domain 215 429 IPR002913 GO:0008289
Lapu7g02201 684 Pfam Homeodomain 18 73 IPR001356 GO:0003677
Lapu7g02201 684 ProSitePatterns 'Homeobox' domain signature. 50 73 IPR017970 GO:0000981|GO:0006355
Lapu7g02201 684 Coils Coil 69 101 - -
Lapu7g02201 684 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 684 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02201 Lapu-Chr7 38444341 38448588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02201 1 684 Homeobox Transcription Factor Family AT4G21750 59.748 0.0 886
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu7g02201 START 2.5e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02201 K09338 - gmx:100793758 915.22