Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02200 ATGCACAGCCCTAGTAATGGACATCAGCCTGAAACTCTAAGAGCATTAATTGATGCATATGGCACTGAAAAAAGCCAAGAATGTCCAAGCAGTAAACCACTGTTAGTTGAACAGATGGATAGAAACTGTATGGACAATAAAGTGTGGTCAACATCATGGCAGAATACTGAAGAGGAAGAGTTTGACTGGGAAGAAATAAAGCCAACCCTAATGGACAATAAAAGTTTGTTACTTGGTTTCTCCAGGGAAAGAACCGTTGTTGCTGCTAATGCAACTTTGTCAGAGCAAGAAGTAAAGAAGGGTTGGTCTAGTGGATCTCAGCTTCCTCCACTTAATGATTCCTCTGCTATGGTGAATTCTATTGGAACCGAGTTTAATGCAGACATTCTGAAGGTTCGTCATGAGTCTGTAGTGAATAGCTTGTATAGTGATCTCCCAAGACAATGCAGAACTTGTGGCCTCCGATTCAGAAGCCAAGAGGAACACCGAAGTCATATGGATTGGCATGTGACTAAGAATCGAATGTCTAAAAGCCGGAAGCAGAAACCCTCTCGGAAGTGGTTTGTGAGTGACTGGATGTGGCTTAGTAGTGCAGAGGCACTGGGAACAAATTCAGGTCCAGCTTTCTTTTCAACAGAAACCACAGAAGAAAAGAAAGATAATGAAGAGGTTGCAGTGCCAGCAGAAGAGGACCAGAAAACATGTGCATTATGTGAAGAGCCTTTTGATGAGTTTTACAGTGATGAAATGGAAGACAGGATGTATAGAGGAGCTGCATACCTGTATCAACCCACAGGAACATTAGCAGCCATGGACAGGTCACAGTTAGGTCCCATAATTCATGCTAAATGTAGATCAGAATCTAAAAGGCCCCCCTCCCAACATCTTGGGAAGAATGATTATGAAGAGGGTACCCCAAGGAAACGAATGCGGGTTTGA 939 0.4302 MHSPSNGHQPETLRALIDAYGTEKSQECPSSKPLLVEQMDRNCMDNKVWSTSWQNTEEEEFDWEEIKPTLMDNKSLLLGFSRERTVVAANATLSEQEVKKGWSSGSQLPPLNDSSAMVNSIGTEFNADILKVRHESVVNSLYSDLPRQCRTCGLRFRSQEEHRSHMDWHVTKNRMSKSRKQKPSRKWFVSDWMWLSSAEALGTNSGPAFFSTETTEEKKDNEEVAVPAEEDQKTCALCEEPFDEFYSDEMEDRMYRGAAYLYQPTGTLAAMDRSQLGPIIHAKCRSESKRPPSQHLGKNDYEEGTPRKRMRV* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02200 312 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 7 74 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lapu7g02200 312 MobiDBLite consensus disorder prediction 283 312 - -
Lapu7g02200 312 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02200 Lapu-Chr7 38438585 38440561 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02200 7 70 C2H2 Transcription Factor Family AT4G04885 51.562 6.72e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g02200 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02200 K14400 - gmx:100794796 303.908