LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu7g02199	ATGTTCTCTCAAAATCTGATTCTCCCTCCTGAAAACCCTAGACCAGCGGCTTCGTTCGCTTCAAAACCCATGAGCAATGAGATCACAATCGCTGCCCAGAAACCTCCTCCGTCAATTCTCGTTGGGCGCTTCAAGGCACTCCTCAAGCAGCGCGATGACGAACTCAGACTTGCCACGGGCGTCCCGGTACCGCCCCCGACCACAAATGAAATCGTTCAGATTTACGACCTTCTCTTATCGGAACTCACCTGCAATTTGAAGCCTATCATCACCGATCTCACAATCATCGCGGAACAGCAGAGGGAGCACGCCAAAGGTATCGCTGACGCCATTTGCGCTCGGATTCTCGAGGTGCCAGCAGATCAAAAGCTTCCCTCACTCTATTTGTTGGACAGTATTGTGAAGAATTTTGGGCAGGAATACATTAAATACTTCTCTTTACGTCTGCCAGAAGTTTTTTGTGAGGCATACAGGCAGGTTCAGCCTAGTTTGCATCCTGCTATGCGACATCTTTTTGGAACCTGGTCAAAAGTCTTTCCACCTTCTGTCCTACGCAAGATTGAAGCTGAATTGCAATTTTCTCTATCACTTAATACCCAATCATCCACCCTGAATGCTGCCAGGGCTTCTGAATCTCCTCGGCCTAGTCATGGCATACATGTTAATCCAAAATACTTACGCCAGTTGGAACACTCAAATGTGGATAGTGTTGGTGCTGAAAAGTTGGATTCATCAGGAAATGCCAATAATACAAACTTTGGTATTGTAGCTAGTAAGACGCACCAAATTTTATCAGGTGGTAGCAGGCTGGGAATATCCTCTTCGCCTTCAAGCATTGGACTTGATAGGCCTTTGTCTGCACCCATGGATGAGTATGCAGCTGACAGTTCTGCTAACAGATTAATTGAGAGAGACTCTCCTCATCCTGCTGTTGATTATGGAGTAGGCAAGGTATTAGGTAGAGATGTGGAGTTGAGTGAATGGCAACGAAAGCAGTATGCTGGAGATGGTCGTAATCGATTTCCAACTTCTATCACATACAGCCTTAGTAATGGACATCAGCGTCAAAGTCCAAGAGCTTTAATTGATGCATATGGCAGTGACAAAAGTCAAGAAACTTCAAGTAGTAAGCCTTTGTTAGTTGAACGGCTGGATGGAAATGGTATAGACAACAAGGTATTGCCTACATCATGGCAGAATACTGAAGAAGAGGAGTTTGATTGGGAAGATATGAGTCCAACCTTAACAGATCATAATAGGAATAACAGTATATTGCCTTCAACTATTGGATTCACCAGGGAAAGGCCTGTTGTTGCTGCTAATGCAGCTTTGTCAGAGCTTGATTCCAGGAAGGGGGTTTGGTCTAGTGGATCTCAGCTTCCTCCAGTGGATGATTCTTCAGCTATAGCGGATGATGCATTTGCTTCTTTGGCTTTTCGGCGAGCACCGATGGGACAGGTACCTGGATTCCAGAATCATGTCAACCATAGTCTGGGCTCTTTTCATCATCCATCCAACTCGTCACAACACATCTTTGGTAATAGGGGGCGAGCTAGAAATCTTACGTTTCCTCCTATTGATAACATTCAGAATGCAGATACAAATCCATATCGAGTTCGACCTGCAGTGTCAAGGATGGTTTCTGGCCGTGTCTCTAATGTGGAACCTAGACCATCAGTTTTGCCTGCAACTCTTGAAATAAGGCCTTCTATAAATTTGAATGTCTCTCGACCACCTACATTAAATCCAATAACTCCATTACATAAACATGTCAGGAGTCAGTTCGAAGCTATACATACTAGTAACCCTAGCGTGAATCATGTAAATAAATCATCATTTATGCCCGAGCAGTCATTTGATAGTGTTGAGAACAAGGATGCAAGTATTTTGAAGATACATCCGATGCCTAATCCGCTTCCTCGATTAATTTCCTCCAACCAGCAAAATCACAGGCAAGCACCACAATTGCAGTTTTTCCCACCATCTCAGGATTCGTCAAACTCACAATTTAGTCATGGGAGTTCTTTGCAGGGACATGGTGCTTCTATAAGTACTGCCATGTCGAATCCGTTACCTGGTATGCAATTCCATTTGCCACCCCAAAGTATTGCAAATAATCCTTTACATTTACAGGGTGGATCCCGTCCACCTTTACCTCCAGGTCGCCCTCCTGCTCCATCTCAAATGATACCTCATCCAAATGCTAGTCCATTTGTGTCAAGCCAACAGCCAACTGTTGGATATACTAATTTAATTAGTTCTCTGATGTCTCAAGGTGTGATCTCATTGGCTAACCAGCTGCCTGCGCAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGAAGCTTCGTTATGAGTCTGCTGTCAATGCGTTGTATGGTGATCTCCCAAGACAATGCACAACTTGTGGACTCCGATTCAGATGCCAAGAGGAACACAGTAGTCATATGGATTGGCATGTAACTAAGAATCGGATGTCTAAAAGCCGGAAGCAGAAACCCTCTCGGAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACCGAGTCAGTTCCAGGTTTTTTGCCTACAGAAACCATAGAAGAAAAGAGAGATGATGAAGAGTTGGCTGTTCCAGCAGAAGAGGACCAGAATGCATGTGCATTATGTGGAGAGCCTTTCGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCTATGCTCCCACGGGGACAACATCAGGGATGGACAGGTCACAGTTAGGCCCTATAATTCATGCTAAATGCAGATCAGAATCTAATATGGCACCATCTGAAGATCTTGGGCTGGAAGAAAAGGTTGCTGATGAAGAGGGTACCCAAAGGAAGAGAAGGCGGAGTTGA	2904	0.4466	MFSQNLILPPENPRPAASFASKPMSNEITIAAQKPPPSILVGRFKALLKQRDDELRLATGVPVPPPTTNEIVQIYDLLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPADQKLPSLYLLDSIVKNFGQEYIKYFSLRLPEVFCEAYRQVQPSLHPAMRHLFGTWSKVFPPSVLRKIEAELQFSLSLNTQSSTLNAARASESPRPSHGIHVNPKYLRQLEHSNVDSVGAEKLDSSGNANNTNFGIVASKTHQILSGGSRLGISSSPSSIGLDRPLSAPMDEYAADSSANRLIERDSPHPAVDYGVGKVLGRDVELSEWQRKQYAGDGRNRFPTSITYSLSNGHQRQSPRALIDAYGSDKSQETSSSKPLLVERLDGNGIDNKVLPTSWQNTEEEEFDWEDMSPTLTDHNRNNSILPSTIGFTRERPVVAANAALSELDSRKGVWSSGSQLPPVDDSSAIADDAFASLAFRRAPMGQVPGFQNHVNHSLGSFHHPSNSSQHIFGNRGRARNLTFPPIDNIQNADTNPYRVRPAVSRMVSGRVSNVEPRPSVLPATLEIRPSINLNVSRPPTLNPITPLHKHVRSQFEAIHTSNPSVNHVNKSSFMPEQSFDSVENKDASILKIHPMPNPLPRLISSNQQNHRQAPQLQFFPPSQDSSNSQFSHGSSLQGHGASISTAMSNPLPGMQFHLPPQSIANNPLHLQGGSRPPLPPGRPPAPSQMIPHPNASPFVSSQQPTVGYTNLISSLMSQGVISLANQLPAQDSVGTEFNPDILKLRYESAVNALYGDLPRQCTTCGLRFRCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLPTETIEEKRDDEELAVPAEEDQNACALCGEPFDEFYSDEMEEWMYRGAVYLYAPTGTTSGMDRSQLGPIIHAKCRSESNMAPSEDLGLEEKVADEEGTQRKRRRS*	968

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu7g02199	967	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lapu7g02199	967	MobiDBLite	consensus disorder prediction	640	691	-	-
	Lapu7g02199	967	MobiDBLite	consensus disorder prediction	339	357	-	-
	Lapu7g02199	967	Pfam	CID domain	86	186	IPR006569	-
	Lapu7g02199	967	ProSitePatterns	Zinc finger C2H2 type domain signature.	801	821	IPR013087	-
	Lapu7g02199	967	MobiDBLite	consensus disorder prediction	713	731	-	-
	Lapu7g02199	967	CDD	CID_Pcf11	75	192	IPR047415	-
	Lapu7g02199	967	ProSiteProfiles	CID domain profile.	67	195	IPR006569	-
	Lapu7g02199	967	PANTHER	PRE-MRNA CLEAVAGE COMPLEX II	62	955	IPR045154	GO:0000993\|GO:0003729\|GO:0006369\|GO:0006378\|GO:0006379
	Lapu7g02199	967	FunFam	polyadenylation and cleavage factor homolog 4	64	192	-	-
	Lapu7g02199	967	Gene3D	-	65	192	IPR008942	-
	Lapu7g02199	967	MobiDBLite	consensus disorder prediction	937	967	-	-
	Lapu7g02199	967	MobiDBLite	consensus disorder prediction	631	742	-	-
	Lapu7g02199	967	SUPERFAMILY	ENTH/VHS domain	67	191	IPR008942	-
	Lapu7g02199	967	MobiDBLite	consensus disorder prediction	335	359	-	-
	Lapu7g02199	967	SMART	558neu5	70	192	IPR006569	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu7g02199	Lapu-Chr7	38425917	38433185	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu7g02199	739	967	C2H2 Transcription Factor Family	AT4G04885	66.812	6.24e-100	330

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu7g02199	K14400		-	gmx:100794796	1523.06