Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02193 ATGGAGAAGGAGAAGGAGAAGGAGAAGCAGAATGAGCGCCATCACGCCAAGACACTCATCTGTGCCCTCAACCTTCTCTCGCGCGACCTCCCTCTCCCTCCTCACATCCTCAACTCCGTCTCTTCCATCTACCGCAATCATGACGATGGAGGTAATTCTGGAGAGGATTTGATGACGGATCTTGAAGATGCTCTGTCTAAGCAGCGTCCAAACTGCGTGTCTGGTTTTAAACTGGAGAAAGCAAAGGAAAATCGGTATCGGAGTCAGATTCAGCATCGGTTAAATGAGCTTCAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAATGCTTGCTTGAACTTTATGGACTAAAGCTTGCAGAGCTGCAGATGAAGGTTCGTTCTGATGTAAGTTCTGAATACTGGCTCAATGCGAAGTGTGCATATCCAGACAGGCAATTGTTTGATTGGGGCATGATGAGGCTGCGTCGTCCATTATATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAATTAAGGAAGAAACGGGAGGCTGAGAGACTGTCAAGATTAGAAGAAAAGGAGAAAAATCATATAGAGACTAGAACAAGAAAATTTTTTGCAGAAATACTTAACACCGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGAGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAAAGGGCAACTCGAGCAGAGAAATTGAGGTTCCAAGCTTTGAAGGCTGATGATCAAGAAGCCTACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTAGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAAAAAATATTCAGATGGTATTGAGCCATTGGAAGATTCTGAAGCTGATTTACCGGAGTCAGATGCTTTAAAGAATGGAATTTCTAAGGAATCACCTGTTGATGAAGATATTGATATGATGGATTCTGATCATAATGGTGATTCCAGTGATTTACTTGAAGGTCAGCGGCAATACAACTCTGCCATACATTCAATTCAAGAAAAGGTGACTGAGCAACCGTCTATACTTCAAGGTGGAGAGTTAAGACCATACCAGATAGAGGGGCTCCAGTGGATGCTTTCTTTGTTCAATAACAACTTGAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACGATACAAACAATATCGCTTATAGCATATCTTATGGAAAACAAGGGTGTTACCGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAATGAATTTACAACATGGGTTCCTAGCATCACAGCTATTCTTTATGACGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTCAATGTTTTACTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCACTGGAAGTACTTGATTGTGGATGAAGGGCATCGGTTGAAAAACCATGAGTCTGCACTAGCAAGAACCTTGGACAATGGTTATCACATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCGGTTCAAAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCCCTCACCGATGAGGAACAACTATTGATCATCCGGCGTCTGCATCAAGTGATAAGGCCCTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAAAAAGTATATTATCAACAAGTTACTGATGTAGGAAGAGTTGGGTTGGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTATTCGTGGGAGAATATGATATGTATAAACGTAAGGAGGAGATTGTTAGAGCATCCGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGTAGAGCTGGTCACAGAGTTCTCCTTTTCTCACAAATGACTCGACTTATGGACATTCTAGAAATTTATTTGCGACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGCAATCTTCTAAGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGATAGTGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGCATTGGACAAAAAAAGGAAGTTAGGGTTTTTGTGTTGGTTAGTGTAGGATCAATTGAGGAGGTGATTCTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAAGCAGGACTTTTCAACACAACTTCGACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGCAGAGGTACAAGCTCACTTGGGACAGATGTGCCGAGTGAGAGAGAAATTAATCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAAAGAAGACAGAAGGAAAATTACAGATCACGGCTCATGGAAGAGCACGAATTGCCAGATTGGGTATATTCTCCAATTAACAAGGATGATAAGTCCAAAGATTTCAACAGTGCGGTCACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTGCAATGGATGAAAGCTGTGGAGAACGGGGAAGACATATCGAAGTTTTCAGCTAAAGGAAAAAGAAGAGACCACCTCTCATCTGACAGCATTGCACAAGCCAGTGATAACACAGTAGCAGAAGAAAGTTTAGAGTTGAGGACTGAAAGTGTTCCCATGTCAAACGATCGAACGAGTGAAGATAGTTTCCATGTGACCCTTTCAAAGAGATTCAAGTCTGAAGGAACAAATTTCCTGAAACATACATACGAGGATGTTGGAAGTGGTTTGAACCATCATGTGTTATCGTGGAATACTCACAAAAAGAAGAGGTCAAGTTTTCTTGGCCAGGGTTCGTTATCTGATGCCAGAGGGCATTCTTCAAATGGAAGAGCAAACTGGAACTGA 3240 0.4182 MEKEKEKEKQNERHHAKTLICALNLLSRDLPLPPHILNSVSSIYRNHDDGGNSGEDLMTDLEDALSKQRPNCVSGFKLEKAKENRYRSQIQHRLNELQELPSSRGEDLQTKCLLELYGLKLAELQMKVRSDVSSEYWLNAKCAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLRKKREAERLSRLEEKEKNHIETRTRKFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDKKYSDGIEPLEDSEADLPESDALKNGISKESPVDEDIDMMDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWVNEFTTWVPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIHWKYLIVDEGHRLKNHESALARTLDNGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGEYDMYKRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPINKDDKSKDFNSAVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSAKGKRRDHLSSDSIAQASDNTVAEESLELRTESVPMSNDRTSEDSFHVTLSKRFKSEGTNFLKHTYEDVGSGLNHHVLSWNTHKKKRSSFLGQGSLSDARGHSSNGRANWN* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02193 1079 MobiDBLite consensus disorder prediction 297 349 - -
Lapu7g02193 1079 Coils Coil 178 198 - -
Lapu7g02193 1079 Gene3D - 609 909 IPR027417 -
Lapu7g02193 1079 Pfam SNF2-related domain 381 669 IPR000330 GO:0005524|GO:0140658
Lapu7g02193 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 856 IPR027417 -
Lapu7g02193 1079 SMART ultradead3 374 567 IPR014001 -
Lapu7g02193 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 603 IPR027417 -
Lapu7g02193 1079 MobiDBLite consensus disorder prediction 325 347 - -
Lapu7g02193 1079 FunFam Chromatin structure-remodeling complex protein SYD 369 612 - -
Lapu7g02193 1079 PANTHER SNF2/RAD54 HELICASE FAMILY 79 978 - -
Lapu7g02193 1079 Pfam Helicase conserved C-terminal domain 689 802 IPR001650 -
Lapu7g02193 1079 SMART helicmild6 718 802 IPR001650 -
Lapu7g02193 1079 FunFam Probable ATP-dependent DNA helicase CHR12 609 908 - -
Lapu7g02193 1079 MobiDBLite consensus disorder prediction 975 1010 - -
Lapu7g02193 1079 Gene3D - 347 602 IPR038718 -
Lapu7g02193 1079 MobiDBLite consensus disorder prediction 1059 1079 - -
Lapu7g02193 1079 CDD SF2_C_SNF 678 813 - -
Lapu7g02193 1079 SMART SnAC_2 895 955 IPR029295 GO:0042393
Lapu7g02193 1079 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 692 859 IPR001650 -
Lapu7g02193 1079 Coils Coil 893 913 - -
Lapu7g02193 1079 Pfam Snf2-ATP coupling, chromatin remodelling complex 896 955 IPR029295 GO:0042393
Lapu7g02193 1079 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 390 556 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02193 Lapu-Chr7 38342028 38350342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02193 360 829 RAD5 or RAD16-like Gene Family AT1G02670 27.224 2.03e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu7g02193 SNF2_N 1.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02193 - - gmx:100786280 2035.38