Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02106 ATGCCTTCACTCACTCTCTCTGACAGTGAAACCACCCTCCAAGAAAGTAAGAAGCTCAGCGCCAAGAAAGCCAAAAACCAATCCCCAATCATTGCGGAGAAGAAGAGTGCCTCCAAACTCCTATCCATTCCCAACGCCCCCGATCCCGACCACGATGGGGTTTCGGGGAAGCACCAGAAGAAGGCGAAGAAGCGCAAGGCTTCAGATATAGAGGCCATGGCGGCGACCAACGATGCCGACGAAGACACTAGTTCCGAGCTGGTCGAGCCCGAATCTTCTAGAGAAGACGACCACAAGAAGAAGAAAAAGAAGAAAAAGGCCAAGTCCGAGGAACAGCCTTTGGTGATGGAAGCAGAGGAAAAAGAAGAGAAGAAGGAGGATCCTAATGCGGTCTCCAAATTCAGGATATCCGAACCGTTGAGGCTAAAACTGAAGGAGAAGGGGATCGAATCGTTGTTCCCGATTCAGGCCATGACTTTCGATTTAGTTCTCGACGGTTCTGATTTGGTTGGTCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCTTTTGTGCTACCCATATTGGAGTCTTTAACAAATGGTCCAGCAAAAGCTTCAAGAAAGACTGGCTACGGGAGGACTCCAAGCGTTCTTGTGCTTCTACCAACTAGGGAATTGGCTTGTCAGGTGCATGCTGATTTCGAAGTTTATGGTGGGGCAATGGGATTGAGTTCTTGTTGTTTGTATGGTGGAGCTCCATATAACACTCAAGAAATTAAGCTTAGGAGAGGTGTTGATATTGTCATTGGCACACCAGGTCGTGTAAAGGATCATATCGAGAGGGGAAATATAGACCTTAGCCAACTAAAATTCCGTGTCCTTGATGAAGCAGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAATTGATTTTAGGTAAGGTTGAAAATGTTAATAAAGTTCAGACTCTTCTTTTCAGCGCTACTTTGCCAGACTGGGTTAAACATATTGCTGCACAATTTCTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTACTAATGTGAGGCATATTGTTCTCCCTTGTTCTGCTTCTGCCAGGTCCCAACTTATCCCGGACATTATTCGCTGTTATAGCAGTGGAGGCCGAACAATTATATTTACCGAGACAAAGGAATCTGCTTCTCAGCTTGCAGGGTTGTTACCTGGAGCAAGAGCCCTCCATGGTGACATACAGCAAGCACAACGTGAGGTTACTCTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATAAACGATGTTCAGTTAATTATCCAGTGTGAGTTCCCACGGGAGGTAGAATCCTATATCCATCGTTCTGGACGAACAGGAAGAGCAGGTAACACTGGGGTAGCTGTTACGCTTTATGATCCAAAAAGATCTAATATATCTAAAATAGAAAGAGAGTCCGGTGTAAAATTTGAACACATATCTGCTCCTCGGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTACCCAAGTTTCTGATAGTGTGATTCCTGCATTCAAAGCTACCGCTGAAGAGCTTTTGAAGAGTTCTGGTTTAACAGTTGTTGAATTGCTGGCAAAGGCTCTTGCAAAAGCTGTTGGTTATACCGAAATAAAGCAAAGATCACTTCTCACTTCTATGGAAAACTATGTTACACTTCTTCTTGAAATTGGGAAACCGATCTTCACTCCTTCTTTTGCCTACGGAATCTTGAGGAGATTCTTGCCTGAAGAGAAGGTGGAGGCTGTGAAAGGTCTTTCACTCACTGCTGATGGAAATGGTGCTGTTTTTGATGTACCAGCTGAAGACTTGGATACATATCTTAGTGGTCAGGAAAATGCTGCTAATGTAAGTCTAGAGGTGTTGAAAGCTTTGCCACGTTTGCAACAGAGAGATCAATCAAGAGGTGGCAGATTTGGTGATGGTGGTGGTCGAGGTGGTGGGAGCAGGTTTGGAAGAGGTGGAGGCCGGAACGGTAGATTTTCTAATGATAGGTTTTCCAATGGTGGTGGAAGAGGTGGTCGTGGCAACTGGGGTGGAAAGAGATGGTGA 2139 0.4535 MPSLTLSDSETTLQESKKLSAKKAKNQSPIIAEKKSASKLLSIPNAPDPDHDGVSGKHQKKAKKRKASDIEAMAATNDADEDTSSELVEPESSREDDHKKKKKKKKAKSEEQPLVMEAEEKEEKKEDPNAVSKFRISEPLRLKLKEKGIESLFPIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSSCCLYGGAPYNTQEIKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVNKVQTLLFSATLPDWVKHIAAQFLKPDKKTADLVGNTKMKASTNVRHIVLPCSASARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEFPREVESYIHRSGRTGRAGNTGVAVTLYDPKRSNISKIERESGVKFEHISAPRPDDIAKAVGGEAAEMITQVSDSVIPAFKATAEELLKSSGLTVVELLAKALAKAVGYTEIKQRSLLTSMENYVTLLLEIGKPIFTPSFAYGILRRFLPEEKVEAVKGLSLTADGNGAVFDVPAEDLDTYLSGQENAANVSLEVLKALPRLQQRDQSRGGRFGDGGGRGGGSRFGRGGGRNGRFSNDRFSNGGGRGGRGNWGGKRW* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02106 712 Gene3D - 355 580 IPR027417 -
Lapu7g02106 712 CDD DEADc 144 337 - -
Lapu7g02106 712 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 513 IPR001650 -
Lapu7g02106 712 SMART ultradead3 148 360 IPR014001 -
Lapu7g02106 712 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 89 534 - -
Lapu7g02106 712 Pfam DEAD/DEAH box helicase 153 330 IPR011545 GO:0003676|GO:0005524
Lapu7g02106 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 486 IPR027417 -
Lapu7g02106 712 Gene3D - 72 342 IPR027417 -
Lapu7g02106 712 Pfam Helicase conserved C-terminal domain 376 474 IPR001650 -
Lapu7g02106 712 SMART helicmild6 397 474 IPR001650 -
Lapu7g02106 712 MobiDBLite consensus disorder prediction 1 127 - -
Lapu7g02106 712 Gene3D - 581 652 - -
Lapu7g02106 712 Pfam GUCT (NUC152) domain 563 658 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lapu7g02106 712 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 342 IPR014001 -
Lapu7g02106 712 CDD SF2_C_DEAD 357 483 - -
Lapu7g02106 712 CDD GUCT_RH7_like 570 655 - -
Lapu7g02106 712 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 286 294 IPR000629 -
Lapu7g02106 712 MobiDBLite consensus disorder prediction 661 712 - -
Lapu7g02106 712 MobiDBLite consensus disorder prediction 108 127 - -
Lapu7g02106 712 FunFam DEAD-box ATP-dependent RNA helicase 7 580 652 - -
Lapu7g02106 712 SUPERFAMILY RNA-binding domain, RBD 567 650 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02106 Lapu-Chr7 37363700 37368949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02106 166 510 Eukaryotic Initiation Factors Gene Family AT1G72730 30.000 2.08e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02106 K16911 - gmx:100820207 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02106 7 37363700 37368949 Lapu7g02106 7 37363700 37368949 ECH