Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02092 ATGTTGTGCATGTGGTTTTCTTTACATCCTTTAATAATTTATTATATGCAATATAGAGAGAGAAGTGAAAAGAGAGAGAGAGAGAGGGAGAGAGGTGCAGAGAAAGATCAGGAAGGAAGCATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTGACCTTCTCAAAGCGCAGAAATGGTTTGCTCAAGAAAGCCTTCGAGCTATCTGTTCTATGCGATGCTGAAATCGCTCTTATCATCTTCTCCAGTCGTGGCAAGCTTTTTCAGTACAGTAGCACTGACATTAACAGAATCATTGAGAAGTATCGTCAATGCTGCTTCAACATGTCTCAGACTGGTGACGAAGCTGAACATCAATCGGAGCAGTGTTTATATCAGGAGCTTTTGGTATTAAGAGTCAAGCATGAGTCACTCCAGCGAACTCAAAGGAATCTTCTTGGAGAAGAACTTGAGTCTCTTAGCATTAAAGAATTGCATAGCTTAGAGAAACAACTGGATAGAACGCTTGCTCAAGCTCGGAAGCACCTATCACAGAAACTGGTGTCAAGAATTGACGAACTACACGGAAAGGTGCGCAACCTGGAGCAGATTAACAAGCATTTGGAATCTAAGGAAATAGGTAAATGCACCCAGATTTGTGAAGATTCTACTCATCACTTTGAAGCTGGAACAGCAGGTTCGTTGCGGCTTCAGCAGGAGCAAATTACTTCAAAAGGAAAAGAAGTAGACACGAGGACTGATCGATGCCAAAGCAGCCATGACAAGAATAACCAATGGCTGCTTTGA 807 0.4263 MLCMWFSLHPLIIYYMQYRERSEKRERERERGAEKDQEGSMGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDINRIIEKYRQCCFNMSQTGDEAEHQSEQCLYQELLVLRVKHESLQRTQRNLLGEELESLSIKELHSLEKQLDRTLAQARKHLSQKLVSRIDELHGKVRNLEQINKHLESKEIGKCTQICEDSTHHFEAGTAGSLRLQQEQITSKGKEVDTRTDRCQSSHDKNNQWLL* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02092 268 ProSiteProfiles K-box domain profile. 128 222 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu7g02092 268 Pfam K-box region 124 211 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu7g02092 268 FunFam MADS-box transcription factor 1 53 125 - -
Lapu7g02092 268 PRINTS MADS domain signature 43 63 IPR002100 GO:0003677|GO:0046983
Lapu7g02092 268 PRINTS MADS domain signature 78 99 IPR002100 GO:0003677|GO:0046983
Lapu7g02092 268 PRINTS MADS domain signature 63 78 IPR002100 GO:0003677|GO:0046983
Lapu7g02092 268 MobiDBLite consensus disorder prediction 246 268 - -
Lapu7g02092 268 Coils Coil 191 211 - -
Lapu7g02092 268 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 50 97 IPR002100 GO:0003677|GO:0046983
Lapu7g02092 268 ProSiteProfiles MADS-box domain profile. 41 101 IPR002100 GO:0003677|GO:0046983
Lapu7g02092 268 CDD MADS_MEF2_like 42 112 IPR033896 GO:0000977|GO:0045944
Lapu7g02092 268 ProSitePatterns MADS-box domain signature. 43 97 IPR002100 GO:0003677|GO:0046983
Lapu7g02092 268 Gene3D - 53 133 IPR036879 GO:0003677|GO:0046983
Lapu7g02092 268 Coils Coil 165 185 - -
Lapu7g02092 268 PANTHER SERUM RESPONSE FACTOR HOMOLOG 41 225 - -
Lapu7g02092 268 SMART madsneu2 41 100 IPR002100 GO:0003677|GO:0046983
Lapu7g02092 268 SUPERFAMILY SRF-like 42 114 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02092 Lapu-Chr7 37210814 37219401 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02092 41 211 MADS-box Gene Family AT2G45650 53.801 1.47e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu7g02092 K-box 5.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02092 K09264 - gmx:100802197 367.466