Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02087 ATGGTGAGGGGAAAGGTTCAAATGAAGAGAATTGAGGATGCAACAAGCCGTCAAGTGACCTTTTCAAAGCGTCGAAGTGGTCTTTTAAAGAAAGCTTATGAGCTATCAGTTCTCTGTGATGCACAAGTGGCTGTCATAGTCTTCTCCCAGAATGGAAGGCTCTATGAGTTCTCAAGTTCCGAGTACGATCTCCTTCATTATTCCATTTGTGCTGCTTAA 219 0.4292 MVRGKVQMKRIEDATSRQVTFSKRRSGLLKKAYELSVLCDAQVAVIVFSQNGRLYEFSSSEYDLLHYSICAA* 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02087 72 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu7g02087 72 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu7g02087 72 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu7g02087 72 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu7g02087 72 Gene3D - 14 69 IPR036879 GO:0003677|GO:0046983
Lapu7g02087 72 SUPERFAMILY SRF-like 3 62 IPR036879 GO:0003677|GO:0046983
Lapu7g02087 72 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lapu7g02087 72 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Lapu7g02087 72 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu7g02087 72 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Lapu7g02087 72 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02087 Lapu-Chr7 37141628 37141872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02087 1 61 MADS-box Gene Family AT5G62165 81.967 1.87e-33 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu7g02087 SRF-TF 8.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02087 - - ccaj:109812709 120.553