Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02075 ATGAGGCCTATTTTCTGTGGAAACTTTGAATATGACGCCCGGCAATCAGAGTTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGACATGAAGTCTGCCCTCTTTTGGACATGTTTCGAGGTTGAAATATTGCCAACCTCACAGCAGAGGCAGCAGAATGGATGGAGAAGGCACTCATTTTCCATTGACCCTCATGAGACATACACTTTTGGGTTCTTGTTCTTGACATCAATTTGTTTACTAATCAAGAAAGGTCCGTTATCACATCAGACGTTAAGCTTTGCTTTTATCTATATGGAAGATGAAAGAGATGCTGAGGCTGCTATTCGTGCTCTTGATCGAGTAGAATTTGGTCGGAAGGGACGAAGACTCCGTGTGGAATGGACAAAGCATGAACGTGGTGTTAGAAGGCCTTCTAGTTCAAGAAGATCTTCAGCTAATGGGAGGCCATCAAAGACCTTGTTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAACCATACGGCAAGATAGTCAGTGTTAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACCAATATGAGCAAGTTACTTGATCGAGTTATTTCGGTTGAATTTGCTGTTAAAGATGATGATGATAGGAGAAATGGATATAGCCCTGAGAGAGGCCGTGATCGTCAACGTGATAGAAGCCGTGATGGAAGACGATCCCCTAGTCCTTATAGGAGAGAAAGAGGTAGTCCTGATTATGGCCGTGGGCCCAGTCCATATCAGAGAGAGAGGGGCAGCCCAGACTATGGCCGTGACCGCAGCCGCAGCAGAAGTCCCCCCAGGAGAGAGCGAGCTAGTCCTGCCTATGGGCGCAGAAGCCCTAGTCCATATAGAAGAGAAAGGGAGGGTTCTGATCCTGCTCGGGACTCCAGCCGCAGTCCCTATCACAAAGAGCGAGGGAGAACTGACCATGGCATTTCTCCTTCTCATAGTCCTGATGAAAGAGGGAGGAAAAGCCCTCAAAATGGTCATGGTTCTAGCCGTAGTCCTCATGATACTGGGAAGACTAGCCCTGAAAATGGACATGGCTCCGGAAGTCCTGATGAAAAAGGGAATCCCAGCCCTTACAATGGTTATGGAAGGAGCCCAAATACTGTGCCCGATCCCAGGGACAGTCCCAACTACGGTGGTCCTGAAAGTCCCATACATGAAAGATATCGCAGCCAGTCTCCCCCTGCAGAAGAATGA 1290 0.4736 MRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSALFWTCFEVEILPTSQQRQQNGWRRHSFSIDPHETYTFGFLFLTSICLLIKKGPLSHQTLSFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRRPSSSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYQRERGSPDYGRDRSRSRSPPRRERASPAYGRRSPSPYRREREGSDPARDSSRSPYHKERGRTDHGISPSHSPDERGRKSPQNGHGSSRSPHDTGKTSPENGHGSGSPDEKGNPSPYNGYGRSPNTVPDPRDSPNYGGPESPIHERYRSQSPPAEE* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02075 429 FunFam Serine/arginine-rich splicing factor RS31 147 237 - -
Lapu7g02075 429 Gene3D - 2 149 IPR012677 -
Lapu7g02075 429 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 156 350 - -
Lapu7g02075 429 MobiDBLite consensus disorder prediction 279 355 - -
Lapu7g02075 429 MobiDBLite consensus disorder prediction 356 377 - -
Lapu7g02075 429 MobiDBLite consensus disorder prediction 228 266 - -
Lapu7g02075 429 SMART rrm1_1 3 130 IPR000504 GO:0003723
Lapu7g02075 429 SMART rrm1_1 156 222 IPR000504 GO:0003723
Lapu7g02075 429 Gene3D - 150 235 IPR012677 -
Lapu7g02075 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 219 IPR000504 GO:0003723
Lapu7g02075 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 34 IPR000504 GO:0003723
Lapu7g02075 429 SUPERFAMILY RNA-binding domain, RBD 140 232 IPR035979 GO:0003676
Lapu7g02075 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 134 IPR000504 GO:0003723
Lapu7g02075 429 MobiDBLite consensus disorder prediction 228 429 - -
Lapu7g02075 429 SUPERFAMILY RNA-binding domain, RBD 3 150 IPR035979 GO:0003676
Lapu7g02075 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 226 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02075 Lapu-Chr7 37006619 37009985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02075 72 229 Eukaryotic Initiation Factors Gene Family AT1G49760 25.000 1.22e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02075 K12893 - gmx:100796509 562.762