Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02055 ATGGGGTGTCAGCCATTGGAAAAGGGAAAACCAAAACATAAGAAGGGGTTATGGTCACCTGAAGAAGACAATAAGCTCAGAAACTACATCCTTAAACATGGTCATGGCTGCTGGAGTTCTGTCCCCATTAAGGCAGGCTTGCAAAGGAATGGAAAGAGTTGCAGACTAAGATGGATAAACTATCTAAGACCAGGATTAAAGAGAGGGAAGTTCAGCAAACAAGAAGAAGAGACAATCCTGACCCTTCACCATATGCTAGGCAACAAGTGGTCACAGATATCACAGCATTTGCCAGGAAGAACAGACAATGAGATTAAAAACTACTGGCATTCATATCTGAAAAAGAAAGTGGCCAAAGCTAAGGAAATGGATTCTCATAACCAAATGAAGTATGCTAGCTCAAGCTCAGATACCATGGATTCTTCAAATTCTCTCCAAAAACTTGCAACTCAAGGTACACAGAATTATGACTTCACCAAAGAGGCTTGTCAAAGCTCCTTACCAAAACTGTTATTTGCTGAGTGGCTTTCATTGGATCAAGTAAACTCTGCAAATTCAGCTGACTCTCTTGGTTTGAGAAATGGATTTGATCAAAATTCCACTCTTCAGGAAGCTGCAATTCATGATATGTCAGAGGTACCCTTTGGTGAAGGATACCATAGATGCTTGGCCAACATTTCAGCCCCTGAGATGTTCAATTCAGAGCTGAAGTATGCAAATCAAATGGTGGAAAATGGTTTCATCCATTGTATGCCTGGAGTTGACTTGAGTAGCAATTTCAGCATGAGCAATGATGCGATAATATATTCATACTCTTCATTCATATATCTCAGACCTTGTGCTAGAGGCAATCCATCTTTTTCCCTTCCAACTATAGTTCCCTTAACCATTTCCTCTGAAATGGGTAAAGCACCTTGTTGTGAGAAACTTGGAGTCAAAAGGGGAGCTTGGACTCCTGAAGAAGACCAAGCCTTGGTTGACTACATCAAGGAGCATGGTCATGGCAGTTGGCGTACACTTCCCAAACATGCAGGTCTCTTACGATGTGGAAAAAGTTGTCGGCTTCGGTGGATAAACTATCTTCGCCCTGGCATCAAGCGTGGCCCATTTACCAGTGAAGAAGAAAGTACAATTGTTCAACTCCATGGCATGCTTGGCAACAGGTGGGCTGCCATAGCATCCCAATTACCTGGAAGAACGGACAATGAGATTAAGAACTATTGGAACACCCATCTAAAGAAGCGTCTCCTTCGATCATGTCATTCCCTAAGAGAAAAACAGTCATGTCTGATTCTGGATCAAACTATTGTTAAGTCTGAATCTCCTTCTACGCGTCACATGGTACAATGGGAAAGTGTAAGAGTTGAGGCAGAGGCAAGATTCTCAATGGAATCCTCGTTGCTCAATTCATGGCCAACGAGTACAACATGCCCTGATCACTTTCTTCATCTTTGGCATTCTGAGGTTGGAAAGTCATTTCGCATGGTCAAGGGAAAGGGAGGAGTTGTGAGTCAAAGTCCTGTCTCGTATCCTTCATCCTCGTCTAAATTGGAGTCTTGTTCAGATGTGTCATTGCAGGTGAAAAACAACGGAACTAGTAGTATCCTCAATCCATACATTGAGGATGTGAACATGGTTCACGAACAGATAAGTAGCTACAAACCAAAGCTTGATGACACAGCTGGGTCTGACTCAGGCAATTATGAATTTCTTGATACTTCAGATTCTGCACTAAAGCACCTACTACATTTGTCTGATGGTGATGTCGGATTCTTGGGACAGAATGATCATTTCTTGAGTCTCCTTGATGCTACATGTGACCAAGATGGTTTCCTTAATATCTCTTCGGGGAAAGGCAATCTTTGA 1866 0.4234 MGCQPLEKGKPKHKKGLWSPEEDNKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSQISQHLPGRTDNEIKNYWHSYLKKKVAKAKEMDSHNQMKYASSSSDTMDSSNSLQKLATQGTQNYDFTKEACQSSLPKLLFAEWLSLDQVNSANSADSLGLRNGFDQNSTLQEAAIHDMSEVPFGEGYHRCLANISAPEMFNSELKYANQMVENGFIHCMPGVDLSSNFSMSNDAIIYSYSSFIYLRPCARGNPSFSLPTIVPLTISSEMGKAPCCEKLGVKRGAWTPEEDQALVDYIKEHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTSEEESTIVQLHGMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRLLRSCHSLREKQSCLILDQTIVKSESPSTRHMVQWESVRVEAEARFSMESSLLNSWPTSTTCPDHFLHLWHSEVGKSFRMVKGKGGVVSQSPVSYPSSSSKLESCSDVSLQVKNNGTSSILNPYIEDVNMVHEQISSYKPKLDDTAGSDSGNYEFLDTSDSALKHLLHLSDGDVGFLGQNDHFLSLLDATCDQDGFLNISSGKGNL* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02055 621 Gene3D - 369 416 - -
Lapu7g02055 621 SMART sant 313 363 IPR001005 -
Lapu7g02055 621 SMART sant 67 115 IPR001005 -
Lapu7g02055 621 SMART sant 14 64 IPR001005 -
Lapu7g02055 621 SMART sant 366 414 IPR001005 -
Lapu7g02055 621 ProSiteProfiles Myb-like domain profile. 362 412 IPR001005 -
Lapu7g02055 621 Gene3D - 69 143 - -
Lapu7g02055 621 Gene3D - 15 67 - -
Lapu7g02055 621 Gene3D - 314 366 - -
Lapu7g02055 621 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lapu7g02055 621 CDD SANT 369 412 IPR001005 -
Lapu7g02055 621 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lapu7g02055 621 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lapu7g02055 621 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Lapu7g02055 621 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 309 361 IPR017930 -
Lapu7g02055 621 FunFam MYB transcription factor 369 416 - -
Lapu7g02055 621 CDD SANT 70 113 IPR001005 -
Lapu7g02055 621 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Lapu7g02055 621 SUPERFAMILY Homeodomain-like 311 408 IPR009057 -
Lapu7g02055 621 CDD SANT 18 62 IPR001005 -
Lapu7g02055 621 FunFam MYB transcription factor 12 68 - -
Lapu7g02055 621 FunFam Myb transcription factor 311 367 - -
Lapu7g02055 621 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 215 224 IPR017972 GO:0005506|GO:0016705
Lapu7g02055 621 FunFam MYB transcription factor 70 141 - -
Lapu7g02055 621 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 362 416 IPR017930 -
Lapu7g02055 621 CDD SANT 316 361 IPR001005 -
Lapu7g02055 621 Pfam Myb-like DNA-binding domain 367 412 IPR001005 -
Lapu7g02055 621 Pfam Myb-like DNA-binding domain 314 361 IPR001005 -
Lapu7g02055 621 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lapu7g02055 621 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Lapu7g02055 621 PANTHER MYB DOMAIN PROTEIN 55 8 216 - -
Lapu7g02055 621 ProSiteProfiles Myb-like domain profile. 309 361 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02055 Lapu-Chr7 36761926 36773094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02055 301 595 MYB Transcription Factor Family AT3G61250 50.495 3.66e-89 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu7g02055 Myb_DNA-binding 6.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02055 K09422 - gmx:100782075 525.783