Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02030 ATGGGTAGCGTCGTAGTGGAAGACGCGGACACTGACACAGTGTATGTGGCAGTGGGAAGGAACGCGGAGAAGACGCAACAACTGTTGCATTGGACGGTTAAGAATTTCTCTGGCAAGAATGTTTGCCTTCTTCATATTCACGGACCTCACTCACTCAATTCGTTCTCCGAAAGTAATCTCTCTGGGCATGAACCAAAAGATCTTCCAATTCAGGCATTCCAGGATCAGGGAAATCAAACAGTGCACGAACTTCTAGACCAATACATTCTTACTTTTGTCCCGGCAGGGATACGGGCCTGTAAATTGTTGATTGAGATGGATGATATTGAGAAAGGGATCACTAAAGCTATTGCTCAGCACAGTATTAGATGGCTTGTAGTGGGAGCAGCACCAGACGGATATAACATGGGCAAACTGGCTAACCAAGATCCAGAGAAGGCTATTTTTATACGTGAACAAGCATTGATATCCTGTAATATTTGGTACATTTGCAAGGGCAACCTCGTATGTAGTAGGGTGTATAGTAAGCATACTTCTGACATAGAGAGTGGACCTACATTGTTGGTGCTCAATTCAAATACAGAAAAGACTGAATCAGAATCGATTCCTGATGCATTGAAATATTTAGATTCTGATGATATGAAAGAAATCCAAAGTATGAGTTCCCACCATTCATTAAATTCAAAATGGTCTTTTAATAAGATCATGGACAGGTCAAAGTTGGCAGATTTGATGTTTCATGAGGATGAAGCATTTGAAAGCCGGTGTGCTAAGGAAATAAGAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGTCAAAGCAAGAAGTTCAGAAAATGAAGAATCAACATGATGAAATACTTGAAGAATTGCTAATGGTCAAAGACCAAAATTCAGCACTTTTGAACCAAATTTCTGAGTCCCAGTGTACAGCAGCAGAGTTTGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGCTTCAGGGAAAAGAGAGATAGGCTTAGAATAGAGCATGCAAATGCAGTTAGGGATGTCGAAGTGCTTAGAAAATTTGGCGAAGCAGATACTTCCTTCTCTTATCAGGTAGAATTCCCTGCATTTTCTTTCGTGGAGATCAATGAGGCAACTCATGATTTTGATCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGAATGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTCGTGAGAGTATATCAGAGTTCCAACATCAGGTAGAGGTCTTGAGTAGGGTAAGACATCCAAACTTGTTGACACTAATTGGAAGCTGTGCTGAGTCTAGGTCACTTGTGTATGAGTACCTAAACAATGGCAGCCTTGAAAGCCACCTTGCCCGCAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATATCCATTGCTACAGATATATGCTCTGCTCTAATCTTCATTCACTCCAGCAAGCCTTGTATTATCCATGGTAATTTGAAACCTAGCAAGGTTCTTCTTGATGCTAACTTTGTTGCCAAACTGAGTGACTTGGGCATTCCTAGTTTAGTCCAGCAAAGTTTGGATTCAGCTGATGCAAGCACAATATGTAATAACCCAAATCAACGTTTGGCGTATGTGGATCCAGAGTATTTTGTCACTGGCAAGTTTACACCAGAGTCAGATGTATATTCATTTGGAGTCATATTATTACAACTTCTAACTGGAAGACCACTTTTGGGGTTAGTTAGGGATGTGAAGTGTGCATTGGAAAAGGAAAACCTTAAAGCAGTCTTGGACTTTTCAGCTGGTGAATGGCCACTTTATCAAACTGAACTGCTTGCATACTTAGCATTGAGGTGTTGTGAAAAGAGTTGGTTGAACCGGCCAGACCTTGTGTCAGAAATTTGGAGTGTTCTTGAACCATTCAAAGCTACTCGTATTGACAAACCATATTTGATTTCTAAGAAGCTTCATCGTGTTCCTTCACATTTTGTCTGCCCCATTGTCCAGGAAATAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGAAGAGGCAATAAGAGGGTGGTTGGATAGTGGCCACGACACTTCCCCCATGACAAACCTGAAGCTTGATCACACGGATTTGGTTCCTAACTATGCTCTTCATAATGCAATTCTGGAGTGGCAGCAACAGTAA 2199 0.4125 MGSVVVEDADTDTVYVAVGRNAEKTQQLLHWTVKNFSGKNVCLLHIHGPHSLNSFSESNLSGHEPKDLPIQAFQDQGNQTVHELLDQYILTFVPAGIRACKLLIEMDDIEKGITKAIAQHSIRWLVVGAAPDGYNMGKLANQDPEKAIFIREQALISCNIWYICKGNLVCSRVYSKHTSDIESGPTLLVLNSNTEKTESESIPDALKYLDSDDMKEIQSMSSHHSLNSKWSFNKIMDRSKLADLMFHEDEAFESRCAKEIRRRKEVEEQLARSKQEVQKMKNQHDEILEELLMVKDQNSALLNQISESQCTAAEFEEKIISAVDLLISFREKRDRLRIEHANAVRDVEVLRKFGEADTSFSYQVEFPAFSFVEINEATHDFDPSWKIGEGRYGSVYKGMLRNMHVAIKMLPSYGRESISEFQHQVEVLSRVRHPNLLTLIGSCAESRSLVYEYLNNGSLESHLARKEKNPLPWQIRISIATDICSALIFIHSSKPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLDSADASTICNNPNQRLAYVDPEYFVTGKFTPESDVYSFGVILLQLLTGRPLLGLVRDVKCALEKENLKAVLDFSAGEWPLYQTELLAYLALRCCEKSWLNRPDLVSEIWSVLEPFKATRIDKPYLISKKLHRVPSHFVCPIVQEIMEDPYIAADGFTYEEEAIRGWLDSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02030 732 ProSitePatterns Protein kinases ATP-binding region signature. 387 408 IPR017441 GO:0005524
Lapu7g02030 732 Pfam U-box domain 663 731 IPR003613 GO:0004842|GO:0016567
Lapu7g02030 732 SUPERFAMILY Protein kinase-like (PK-like) 357 642 IPR011009 -
Lapu7g02030 732 ProSiteProfiles Protein kinase domain profile. 381 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g02030 732 SUPERFAMILY RING/U-box 660 732 - -
Lapu7g02030 732 Gene3D Phosphorylase Kinase; domain 1 354 453 - -
Lapu7g02030 732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 732 IPR013083 -
Lapu7g02030 732 PANTHER OS02G0152300 PROTEIN 14 728 - -
Lapu7g02030 732 Gene3D Transferase(Phosphotransferase) domain 1 454 656 - -
Lapu7g02030 732 Pfam Protein tyrosine and serine/threonine kinase 386 634 IPR001245 GO:0004672|GO:0006468
Lapu7g02030 732 Coils Coil 256 297 - -
Lapu7g02030 732 CDD STK_N 13 166 - -
Lapu7g02030 732 SMART Ubox_2 666 729 IPR003613 GO:0004842|GO:0016567
Lapu7g02030 732 ProSiteProfiles U-box domain profile. 662 732 IPR003613 GO:0004842|GO:0016567
Lapu7g02030 732 CDD RING-Ubox_WDSUB1-like 664 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02030 Lapu-Chr7 36505276 36516022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02030 12 731 U-box Gene Family AT2G45910 39.623 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lapu7g02030 PK_Tyr_Ser-Thr 6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02030 - - pvu:PHAVU_007G072300g 1301.96