Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01954 ATGTATGTATATACGCATATATACATAATAGTGATAATAATATTGTTGTTATTACATAAAATAAAAAGCCATCTAATTTTTTTGAAAGAATTCACCACCCTTTTTGCTCTGTTTATATTTTTAATTTTTCTCCTCGTCTCAGCTGCTGTAATTGCTGCGGTGCTGTTTTGGAAAAGAGGGAGAGACCCAAAAGAGACTATGCTTGGGGACTCAGCTGTGTTGGGAGCAGGAGGCGGAAGTGGCGGCGGAGAAGGTGGTGCCTCCGCCGATGCAGTGGGTGGCGTGACGCATGACGGGGCGGTTGCAGCGAGCGGAGGCGGTGGCGGAGCTGGATCAAATTCAGGGGACGACGAAAGGAGTAGAATCGAAGAGGGAGAACGTAGCTTCGGCGGCAACCGGTGGCCCCGACAAGAGACTTTGGCGTTGTTAAGGATACGGTCGGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAGGGTCCTTTGTGGGAAGAAGTATCCAGGAAAATGGCAGAGCTCGGGTATCACAGAAGTTCCAAGAAGTGCAAAGAGAAATTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGTGGGAAACAAGATGGAAAAACATATCGTTTCTTTGATCAACTACAAGCCCTTGAGAATCACACTCCAGCACCCCATTCTCCCAACCCATCACCAAAACCACCACAATCAGCACCATCAAGACTAAATGCTACAACAACAGCTGCATCAGTGCCAATACCAATTGCCACAGCAACAACAACTGCTTCATCATTGTCACTTCCAATTCCAACGACAATAACAACAGTGCCAATGCAGCCAATACTGTCCAACACCACTCTCACTAGTACTGTCCCCCATATCACTGTTCCATCAACAACACCACTCCCTATAACCATACCCCAGCCCATTCTCACTACCCCATCAATACATCTCTCAATTCCTTCCTACCCTCCAACAAACCCTACCACCAACACAACCCCACCACCCTCTTTCCCCACGCTCCCCACCGACACCTTCTCCAATTCTAGCTCCTCCTCCACCTCCTCCGACGAAACATTGGAAGGTAGGCGCAAGAGGAAGCGCAAGTGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTGATCGAGAAGCAAGAGGATCTACAGAAGAAGTTCCTGGAAGCCATAGAGAAACGAGAACACGACAGAATAGCAAGAGAAGAAGCATGGAGAGTCCAGGAGATGCAAAGAATCAATAGAGAAAGAGAAATCCTCGCACAAGAAAGATCCATAGCCGCAGCCAAAGACGCTGCCGTCATGTCATTCCTTCAAAAAATAGCCGAACAACAAAACCTCGGTCAAGCATTGAGCAGCATCAACCTCGTACAACAACAACCACAGCAACAACCTCAACCACCACTACAACAACTACCACCATCTAATGTAGCACTACCTCCTGTGCAACAACCACTGCCCATGGTTGTTACGCAGCCTGTGGTGTTGCCAGTGGTCTCACAAGTGACCAACATGGAGATAGTGAAAGTTGATAACCACAACAATAATAATAGTGAGAATTTCACGCCATCGAGTTCTTCAAGGTGGCCAAAGGTGGAGGTTCAGGCATTGATAAAGCTTCGAACGAACCTGGATGCAAAGTATCAAGAGAACGGACCAAAGGGTCCTCTCTGGGAGGAGATCTCATCCTCAATGAGGAAGCTCGGGTACAACCGAAACGCGAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGCGGAGACCGGAAGATTCCAAAACGTGCCCTTATTTCCACCAACTGGACGCGCTGTACAGGGAGAAGAGCAAGGTGGAGGGCGTGGCGACGGCGGTGAAGCCGGAGAGCACGGTGGCACCGCTGATGGTGCGGCCGGAGCAGCAATGGCCACCTCAGGAGGAAACGATGAGAGATAGGGACATCAGAATGGAGGACGTGGAGAATGAAGAGGACGATTACGAAGAAGAGAGAGAGAGAGAGGGAGAGGGAGAGGGAGATGAAGAAGAAGATGACGAAGAGGATGAAGAAGGTGGTGGTGGTGGGAAATATGAGATAGTGGCGAACAAAACAAGTGGTGGTTCAGTGGGTGCTTCAGTGGGGGCATCAACGGAGTAG 2178 0.4871 MYVYTHIYIIVIIILLLLHKIKSHLIFLKEFTTLFALFIFLIFLLVSAAVIAAVLFWKRGRDPKETMLGDSAVLGAGGGSGGGEGGASADAVGGVTHDGAVAASGGGGGAGSNSGDDERSRIEEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKQDGKTYRFFDQLQALENHTPAPHSPNPSPKPPQSAPSRLNATTTAASVPIPIATATTTASSLSLPIPTTITTVPMQPILSNTTLTSTVPHITVPSTTPLPITIPQPILTTPSIHLSIPSYPPTNPTTNTTPPPSFPTLPTDTFSNSSSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIEKQEDLQKKFLEAIEKREHDRIAREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGQALSSINLVQQQPQQQPQPPLQQLPPSNVALPPVQQPLPMVVTQPVVLPVVSQVTNMEIVKVDNHNNNNSENFTPSSSSRWPKVEVQALIKLRTNLDAKYQENGPKGPLWEEISSSMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYREKSKVEGVATAVKPESTVAPLMVRPEQQWPPQEETMRDRDIRMEDVENEEDDYEEEREREGEGEGDEEEDDEEDEEGGGGGKYEIVANKTSGGSVGASVGASTE* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01954 725 MobiDBLite consensus disorder prediction 327 341 - -
Lapu7g01954 725 MobiDBLite consensus disorder prediction 640 725 - -
Lapu7g01954 725 MobiDBLite consensus disorder prediction 116 131 - -
Lapu7g01954 725 CDD GT1 132 197 - -
Lapu7g01954 725 FunFam Trihelix transcription factor GT-2 534 595 - -
Lapu7g01954 725 MobiDBLite consensus disorder prediction 342 357 - -
Lapu7g01954 725 PANTHER FI21293P1 108 669 - -
Lapu7g01954 725 MobiDBLite consensus disorder prediction 101 133 - -
Lapu7g01954 725 MobiDBLite consensus disorder prediction 666 699 - -
Lapu7g01954 725 Coils Coil 657 684 - -
Lapu7g01954 725 ProSiteProfiles Myb-like domain profile. 532 590 IPR001005 -
Lapu7g01954 725 FunFam Trihelix transcription factor GT-2 134 195 - -
Lapu7g01954 725 Gene3D - 134 195 - -
Lapu7g01954 725 Gene3D - 534 595 - -
Lapu7g01954 725 MobiDBLite consensus disorder prediction 317 365 - -
Lapu7g01954 725 Coils Coil 371 398 - -
Lapu7g01954 725 ProSiteProfiles Myb-like domain profile. 132 190 IPR001005 -
Lapu7g01954 725 CDD GT1 532 597 - -
Lapu7g01954 725 MobiDBLite consensus disorder prediction 220 244 - -
Lapu7g01954 725 Pfam Myb/SANT-like DNA-binding domain 132 218 IPR044822 -
Lapu7g01954 725 Pfam Myb/SANT-like DNA-binding domain 532 619 IPR044822 -
Lapu7g01954 725 SMART sant 530 592 IPR001005 -
Lapu7g01954 725 SMART sant 130 192 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01954 Lapu-Chr7 35700531 35705329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01954 123 650 Trihelix Transcription Factor Family AT1G76880 52.823 4.29e-162 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lapu7g01954 Myb_DNA-bind_4 2.7e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01954 - - pvu:PHAVU_007G079700g 924.08