Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01953 ATGTCCTTCCGCAGCATAGTTCGTGATGTTAGGGATGGATTTGGAAGCCTATCTAGGAGGAGTTTTGAGGTAAGGCTTCCTGGCCATAAAAGGGGCAAGTCACGCAGTTCAGTCCACGAGTTGCAGGAGCAGCCAGTGGTCATACAGAACAGCCGGTGGGCGAGTCTTCCCCCTGAGCTTCTTCGAGATGTTATTAATAGATTGGAAGCTAGCGAGAGTACATGGCCTGGTCGTAAGCATGTGGTTGCTTGTGCTGCCGTGTGCAAGTCCTGGAGAGCAATGTGCAAAGAAATTGTCAGCAGTCCTGAATTCTGTGGGAAGATTACTTTCCCTGTTGCCATGAAGCAGCCTGGGCATAGGGATGGAACCATTCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCATCTGTTCCTTTGCCTCAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTGCTCTCTGCAAAAAGGACCAGAAGAACAACTTCCACGGAGTATATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACGTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAGCCACCATACAACAATGCTATGCTGTCCCCACCTGGGCGTAGCCGAAGGTTTTCGAAAAAGGTTTCTCCAAAGGTCCCTAGCGGCAGCTACAACATTGCCCAGGTCACTTATGAGTTGAATGTCCTTGGTACTAGGGGTCCGCGAAGGATGAATTGCACAATGTGCTCGATTCCTGCATCATCCCTTGAGCCTAATGGCGTTGTCCCAGGCCAGCCTGAGCTCCTTGCCCGTCCCCTTGAGGATTCTTTTCGGAGTATATCCTTCTCAAGATCAATTGACAATTCAACTGAGTTTAGCAGCTCTAGGTTCTCAGACATAATGGGAATCGGCAATGAAGAAGAGGAGGCAAAGGTGAGACCATTAGTTCTGAAGAACAAGTCTCCAAGGTGGCATGAACAACTCCAATGTTGGTGCCTCAACTTTAGAGGAAGGGTCACTGTTGCCTCTGTAAAGAATTTTCAGTTGATTGCTGGAACACCGCCAACAGCCCCCGCTCCTGTAGGATCAGGACCTACACTATCCCAGCCAACACAGTCTTCTTCTGACCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTACCGGTACCCCCTCTCTGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACAAAATTGGCTTGTGAATAG 1293 0.4687 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHKRGKSRSSVHELQEQPVVIQNSRWASLPPELLRDVINRLEASESTWPGRKHVVACAAVCKSWRAMCKEIVSSPEFCGKITFPVAMKQPGHRDGTIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAMLSPPGRSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMCSIPASSLEPNGVVPGQPELLARPLEDSFRSISFSRSIDNSTEFSSSRFSDIMGIGNEEEEAKVRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAGTPPTAPAPVGSGPTLSQPTQSSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01953 430 Gene3D - 48 102 - -
Lapu7g01953 430 Pfam Tub family 114 425 IPR000007 -
Lapu7g01953 430 MobiDBLite consensus disorder prediction 372 386 - -
Lapu7g01953 430 FunFam Tubby-like F-box protein 110 430 - -
Lapu7g01953 430 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Lapu7g01953 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Lapu7g01953 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lapu7g01953 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Lapu7g01953 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lapu7g01953 430 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Lapu7g01953 430 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Lapu7g01953 430 FunFam Tubby-like F-box protein 48 101 - -
Lapu7g01953 430 MobiDBLite consensus disorder prediction 365 386 - -
Lapu7g01953 430 PANTHER TUBBY-RELATED 39 428 - -
Lapu7g01953 430 CDD F-box_AtTLP-like 53 97 - -
Lapu7g01953 430 Pfam F-box domain 53 100 IPR001810 GO:0005515
Lapu7g01953 430 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Lapu7g01953 430 Gene3D Tubby Protein; Chain A 110 430 IPR025659 -
Lapu7g01953 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Lapu7g01953 430 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Lapu7g01953 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01953 Lapu-Chr7 35651859 35655910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01953 1 430 TUB Transcription Factor Family AT1G76900 68.192 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lapu7g01953 Tub 5.7e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01953 K19600 - gmx:100817532 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00849 4 21693090 21697161 Lapu7g01953 7 35651859 35655910 PCT