Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01935 ATGGATCCTCATACTGAAGAGCTGCCTCAGTACATACATATAAATCAGAATGAGTTTTTCATGCGAAGGCACAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATACGATGCAGATGACACTGACAGCGCATGTGGGGATAGCTGCTTGAATGTTTTAACCAGCACTGAATGCACCCCTGGTTATTGCCCTTGTGATATCTTATGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCTAAAACGAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGACGAGGATCTTAAGGCAGGACAATTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCCTATGAAAATCAAGGCCTTAAAGATGCATTTATCATTTGCCTTAATGCATCTGAATCTATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAATTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTAGCTTATGATTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGTTGCCTATGTGGTGCACTCAAATGTTCAGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGATGATAGGTACTCTGTTGAGAAAATTCCTGTATATGATTCTGCGGAGGATGAACCGGTGTCAAATGTTAATGGACGAACTGAATCCTCTTTGGATGTTATACTTAAAGCTGAGCAACTATCTGAGTCCACTGGTTTCCATGTCCAGTCCCTTGATTCAGTTCAGATGAAAGGTTTAGATGTTAAAAAGATTAAAACTGAAGTAGCAGACGAGGATATGCACCTGTACTCCCACGATAGTGAACAGACCCTTTCACAAAAGAATGCAATGATATCACGAATCCGAAGTAATGCTGCTGGCAGAAACTATCACATCGGACCTAGGTCCTTGTCCACCAAAAGACCAAGGGCACATAATGGCGGAAGGTTTAAAAATCTTGTAGAGAAGAAAATTGATGCAAAGTTTGCTGCTGGCCTCCTAGCATCCAAGGAAGCACAAGAGGAGATTTTAAATTGTGAGAAAAGAAAGGATGATGCTACATCTACTCTCGATTCCTTATACGATGAAATACGGCCTGCTATTGAGGAACACGAGAGGGATAGCCAAGACAGTGTATCTACCACTGTCGCAGAGAAGTGGATACAGGCTTGCTGCCTAAAATTGAAGGCTGAGTTTGATCTTTACTCGTCAATTGTCAAAAATGTTGCTTGTACTGCGCAAAGAGCACCCGGGCAAGCAAAACATACTGAACTAGATAATGAAAACGAAATTAAGTTCTTGACATGTTGA 1446 0.4059 MDPHTEELPQYIHINQNEFFMRRHKKQKEEDIAICECKYDADDTDSACGDSCLNVLTSTECTPGYCPCDILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDLKAGQFVIEYCGEVISWKEAKRRSQAYENQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDEPVSNVNGRTESSLDVILKAEQLSESTGFHVQSLDSVQMKGLDVKKIKTEVADEDMHLYSHDSEQTLSQKNAMISRIRSNAAGRNYHIGPRSLSTKRPRAHNGGRFKNLVEKKIDAKFAAGLLASKEAQEEILNCEKRKDDATSTLDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQRAPGQAKHTELDNENEIKFLTC* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01935 481 Gene3D SET domain 1 235 IPR046341 -
Lapu7g01935 481 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Lapu7g01935 481 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
Lapu7g01935 481 FunFam Histone-lysine N-methyltransferase 1 235 - -
Lapu7g01935 481 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Lapu7g01935 481 SUPERFAMILY SET domain 9 220 IPR046341 -
Lapu7g01935 481 SMART set_7 83 206 IPR001214 GO:0005515
Lapu7g01935 481 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0042054
Lapu7g01935 481 PANTHER SET DOMAIN PROTEINS 6 461 - -
Lapu7g01935 481 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
Lapu7g01935 481 Pfam SET domain 94 200 IPR001214 GO:0005515
Lapu7g01935 481 Coils Coil 381 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01935 Lapu-Chr7 35338321 35346150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01935 65 222 C2H2 Transcription Factor Family AT2G23740 34.270 7.37e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lapu7g01935 SET 5.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01935 - - gmx:100804657 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01935 7 35338321 35346150 Lapu7g01935 7 35338321 35346150 ECH