Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01934 ATGGACCACGCCTTCCAAGCCATCGCCGCCGCCATCGGCAGCTTCTTCATCGTCACGCTCCTCCTCGCCGGCGTTATCATCCTCTGCCAGCAGTACCGCAACTCCAACAAAGCCCGCACTCTTACCACTCATAGATCACCCCGACCCGCCCGCGACGCCTCTTTCTCCCTCGCAGTCGTCGACGCTAGCTGGTCCTCCGACCTCAACCTCATAAAGATCACGTGGGAGGAGCTCGCCGTTGCCACCGAAAACTTCTCCCCGCACCTCATCGTCGGCGACGGCAGTTTCGGCCTCGTCTACAAGGCCCGCCTCTCCACCAACGCCGTAGTCGCCGTCAAGAAGCTCTCCCCGGACGCCTTCCAGGGCTTCCGCGAGTTCAGGGCGGAGATGGAAACCCTAAGCAAGCTCAACCACCCAAACATCGTCAGAATCCTCGGGTACTGGGCCTCCGGTCCAGAACGCTTACTCGTCTACGAGTTCATCGAAAAGGGAAACCTCGACCAGTGGCTCCACGAGCCTGATCTCTCTCGCTCCCCCCTGTCCTGGGAAACCCGAGTCAACATCATCCGTGGCGTGGCCCATGGGCTTTCCTACCTCCACCGGCTCGAAAAGCCCGTCATTCACCGCGACATAAAGGCCAGCAACATCTTGCTGGACTCCAAGTTCCAGGCCCACATCGCTGACTTTGGACTCGCGCGCAGGATCGATGAAACGCACTCCCACGTTTCCACACAGTTCGCGGGCACTATGGGGTACATGCCTCCCGAATACATAGAAGGGTCCAATGTGGCTAACACGAAGGTGGATGTGTATAGTTTTGGGATTTTGATGATTGAGACCATGTCGAGTCACCGGCCCAATTTGCCGATGAAATTGGGCCAGGATGACATTGGGATTGTCCAGTGGGCCAGGAAGTTGAAGGAGGAAAATGCGGAGATGGAGATGGTTGATGTGAGTATTTCAAGAGAAGGGTTGAAGGAGGAGAGTGTTAAGGAGTATGTGCGTATCGCGTGTGAGTGCACCCGTCAGATGCAGAAGGAAAGGCCCGAAATGCCACAAGTTGTGCAATGGTTGGACTCCATGCCACTCAAACTTTTGATCTCTTCCTAA 1110 0.564 MDHAFQAIAAAIGSFFIVTLLLAGVIILCQQYRNSNKARTLTTHRSPRPARDASFSLAVVDASWSSDLNLIKITWEELAVATENFSPHLIVGDGSFGLVYKARLSTNAVVAVKKLSPDAFQGFREFRAEMETLSKLNHPNIVRILGYWASGPERLLVYEFIEKGNLDQWLHEPDLSRSPLSWETRVNIIRGVAHGLSYLHRLEKPVIHRDIKASNILLDSKFQAHIADFGLARRIDETHSHVSTQFAGTMGYMPPEYIEGSNVANTKVDVYSFGILMIETMSSHRPNLPMKLGQDDIGIVQWARKLKEENAEMEMVDVSISREGLKEESVKEYVRIACECTRQMQKERPEMPQVVQWLDSMPLKLLISS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01934 369 Gene3D Phosphorylase Kinase; domain 1 54 160 - -
Lapu7g01934 369 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Lapu7g01934 369 SUPERFAMILY Protein kinase-like (PK-like) 68 363 IPR011009 -
Lapu7g01934 369 SMART serkin_6 85 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g01934 369 FunFam Phytosulfokine receptor 2 45 160 - -
Lapu7g01934 369 Pfam Protein kinase domain 90 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g01934 369 CDD STKc_IRAK 91 361 - -
Lapu7g01934 369 Gene3D Transferase(Phosphotransferase) domain 1 161 364 - -
Lapu7g01934 369 FunFam Phytosulfokine receptor 2 161 362 - -
Lapu7g01934 369 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 360 - -
Lapu7g01934 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Lapu7g01934 369 ProSiteProfiles Protein kinase domain profile. 85 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01934 Lapu-Chr7 35335526 35336637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01934 70 358 Receptor kinase-like Gene Family AT5G07280 44.138 4.86e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lapu7g01934 Pkinase 5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01934 - - gmx:100802728 606.675