Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01911 ATGGCAGCAGCTGTTTCTTCTCCCATGACTCAGTCTGTGGCTGGAACAGCGGCTGGCGGAGGGCCATTTTTGAATGCCTCATTGTACGTGGGCGATCTCGATGTAAATGTAAATGAGGAACAACTTTATGATCTTTTCAGTCAAGTTGCTCAGATTATTTCAATTAGGGTTTGCAGGGATCAGAACAAACGATCTTCTCTTGGTTATGCTTATGTCAATTTTTCTAATGCTCAAGACGCATCCAATGCCATGGAACTTTTGAACTTTACTCTGGTTAACGGAAAACCAATTCGAATTATGTTTTCTCAACGTGATCCAAGCATTAGGAAAAGTGGACATGGCAACGTGTTCATAAAGAATCTGGATACATCAATTGATAACAAAGCATTGCATGACACTTTTGCTGCCTTTGGCACGGTACTGTCATGTAAAGTGGCGACCGATGGTAGTGGTCAGTCAAAAGGATATGGTTTTGTTCAATTTGATAATGGAGATTCTGCTCAGAATGCAATCAGACAGTTGAATGGCATGTTGATAAATGATAAGCAAGTTTACGTTGGGCTTTTTATCCGGCGTCAGACTAGGATAAATGGTTCACCTAAATTTACTAATGTGTATGTAAAAAATTTTTCTGAAGGATTTACTGCCAACGATCTCAACAAGTTATTTGACTCTTATGGTACAATAACGAGTGCTACTGTTATGAAAGATATGAATGGGAAATCTCGATGTTTTGGTTTTGTAAATTTTCAGAGTCCAGATTCAGCCGCCGCCGCAGTTGAGAGGTTAAATGGTACTTCTATTGATGACAAGGTTTTATATGTGGGGAGAGCTCAAAAGAAAGCAGAAAGAGAGAAGGAGTTAAAAGCTAAAATGGATCAGGAAAGAATAAGTAGATATGAAAAATTACAAGGTGCTAACCTGTATTTGAAAAATCTTGATGACAACTTCAATAATGAAAATCTGAAAGATCTTTTTTCTGAGTTTGGGACTATAACATCTTGCAAGGTGACTGTTGATTCAAATGGACATAGCAAAGGGTCTGGTTTTGTTGCATTTTCTACACCAGAGGAAGCGAAGAAAGCTTTGAATGAAATGAATGGCAAGTTGATCGGACGAAAGCCTCTCTATGTTGCTGTGGCCCAGCGTAAAGAAGAGAGGAAAGCTCATTTACAGGCTCAATTTGCTCTCCGAACATCTGCTGGAATGACACATTTGCCTGCTGGCATTCCTGTATATCATCCTGTGGCACCAAGACTTGCTCCTCAGCAATTATATTTTGGTCAAGGCACAACTGGCTTTGTACCACCACAACCTGCTGGATATTCATACCAACAACAAATTTTGCCTGGAATAAGGCCTGGATTTGCTCCCAATTTTATTACTCCTTACCACTTTCAAAGGCAGAGTCAGTCTGGACATAGAACAGGAGTTCGACGAAATGGAAACATTCCATCAGTGCAACAGAACCAGATGTTTCATCCTAATTCCAACCAAGGATTTCGATACATGTCTAATGGTCGAAATGGTCCAACTATGTCTATGCACTTTGATGGTCCTGGAATCAATGCAGCTACTAATGATTATCAGCGGGTTGGAGCATTGTCTACTACACTTGCATCAGCCCTTGCATCTGCCACACCAGAAAATCAGCGCATGATGTTGGGTGAATATCTATATCCTCTTGTGGACCGTCTCACATCAAACCAATATACAGCGAAAGTAACTGGGATGTTGTTGGAAATGGACCAGTCAGAAGTAATTAATCTGATTGAATCTCCTGATGACCTGAAGATAAAGGTGTCTGAGGCAATGCAGGTATTATATGAGGCTGCACCTGATTCTGGAGTTGTTGATCAGATTGGCTCGTTATCTGTGACTGAATGA 1887 0.4054 MAAAVSSPMTQSVAGTAAGGGPFLNASLYVGDLDVNVNEEQLYDLFSQVAQIISIRVCRDQNKRSSLGYAYVNFSNAQDASNAMELLNFTLVNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVATDGSGQSKGYGFVQFDNGDSAQNAIRQLNGMLINDKQVYVGLFIRRQTRINGSPKFTNVYVKNFSEGFTANDLNKLFDSYGTITSATVMKDMNGKSRCFGFVNFQSPDSAAAAVERLNGTSIDDKVLYVGRAQKKAEREKELKAKMDQERISRYEKLQGANLYLKNLDDNFNNENLKDLFSEFGTITSCKVTVDSNGHSKGSGFVAFSTPEEAKKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFALRTSAGMTHLPAGIPVYHPVAPRLAPQQLYFGQGTTGFVPPQPAGYSYQQQILPGIRPGFAPNFITPYHFQRQSQSGHRTGVRRNGNIPSVQQNQMFHPNSNQGFRYMSNGRNGPTMSMHFDGPGINAATNDYQRVGALSTTLASALASATPENQRMMLGEYLYPLVDRLTSNQYTAKVTGMLLEMDQSEVINLIESPDDLKIKVSEAMQVLYEAAPDSGVVDQIGSLSVTE* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01911 628 Gene3D - 115 188 IPR012677 -
Lapu7g01911 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Lapu7g01911 628 CDD RRM2_I_PABPs 112 187 IPR045305 -
Lapu7g01911 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 383 IPR000504 GO:0003723
Lapu7g01911 628 SUPERFAMILY RNA-binding domain, RBD 26 193 IPR035979 GO:0003676
Lapu7g01911 628 Gene3D - 533 612 - -
Lapu7g01911 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Lapu7g01911 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 376 IPR000504 GO:0003723
Lapu7g01911 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Lapu7g01911 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Lapu7g01911 628 Gene3D - 303 403 IPR012677 -
Lapu7g01911 628 SMART rrm1_1 27 100 IPR000504 GO:0003723
Lapu7g01911 628 SMART rrm1_1 204 276 IPR000504 GO:0003723
Lapu7g01911 628 SMART rrm1_1 307 379 IPR000504 GO:0003723
Lapu7g01911 628 SMART rrm1_1 115 187 IPR000504 GO:0003723
Lapu7g01911 628 PANTHER RNA BINDING PROTEIN 26 88 - -
Lapu7g01911 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Lapu7g01911 628 SUPERFAMILY PABC (PABP) domain 488 612 IPR036053 GO:0003723
Lapu7g01911 628 FunFam Polyadenylate-binding protein 192 288 - -
Lapu7g01911 628 FunFam Polyadenylate-binding protein 19 114 - -
Lapu7g01911 628 CDD RRM3_I_PABPs 202 281 - -
Lapu7g01911 628 Pfam Poly-adenylate binding protein, unique domain 543 608 IPR002004 GO:0003723
Lapu7g01911 628 Coils Coil 275 295 - -
Lapu7g01911 628 FunFam Polyadenylate-binding protein 532 614 - -
Lapu7g01911 628 CDD RRM4_I_PABPs 305 383 - -
Lapu7g01911 628 SMART rrm2_1 27 100 IPR003954 GO:0003676
Lapu7g01911 628 SMART rrm2_1 307 379 IPR003954 GO:0003676
Lapu7g01911 628 SMART rrm2_1 115 187 IPR003954 GO:0003676
Lapu7g01911 628 SMART rrm2_1 204 276 IPR003954 GO:0003676
Lapu7g01911 628 Gene3D - 196 302 IPR012677 -
Lapu7g01911 628 SUPERFAMILY RNA-binding domain, RBD 202 387 IPR035979 GO:0003676
Lapu7g01911 628 FunFam Polyadenylate-binding protein 115 188 - -
Lapu7g01911 628 FunFam Polyadenylate-binding protein 289 394 - -
Lapu7g01911 628 Gene3D - 23 114 IPR012677 -
Lapu7g01911 628 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 26 608 IPR006515 GO:0003723
Lapu7g01911 628 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 535 613 IPR002004 GO:0003723
Lapu7g01911 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Lapu7g01911 628 SMART poly_2 547 611 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01911 Lapu-Chr7 35116820 35120387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01911 25 608 Eukaryotic Initiation Factors Gene Family AT1G22760 56.146 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01911 K13126 - gmx:100783163 1014.6