Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu7g01902 | ATGGCCACTTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGTAATATACCGTATGATGCCACAGAGGAGCAGCTTGTCGAAATCTGCCAGGATGTTGGCCCAGTAGTCTCATTCAGATTAGTTATTGACAGGGAAACCGGGAAACCAAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAGACAGCTTTAAGCGCAAGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGGGTTGATTTTGCTGAAAATGACAAAGGGAATGACAGAAATAGAGAACAGGGTCGTGGCGGGCCTGGAATGACAACAAATGTTGACCCTCAGAAACAAGTTGGTGGCCCGGCTGTCCATGGAGAAGCTGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCAACTGTCATGACAGCGGCTCTAGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATAGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTTACGGACATGATCTCTGAGCTCAAGGGAATGGCTACACAAAACAAGGATCTGGCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTTCAGGCTCAAATAATGCTTGGAATGGTGACTTCCCAAGTGTTACAAATGCCAAACCTTAGGCTGGTTTCGGATCAAACCTCACAGTCTTTAATGAGTGAAGGTCAGCTGGGTCAGCCACCATTGATTCAAACTCTGCCTGGCCTTCCTCTTCATGGGCAGAGCAAATTGCAGTCTGGTTTGACACCTTATGCTCAAGAAGGCCAAGTCAGCACTGTTCTTCATAATCCGCTGGCTTCTAATCAATTAGCTGCTCATCCAAAGCCTCCAGTGCAGCCCCGAATTCCCCTTCAACAACATCCAAACAACCTTGTACTGCCTGGAACTTTATCAGGGCAGCCTAATTTATTGCTTCCTTCTGTGCGCCCGGGTTTGGGAAGTTTGTCTGTCAGGCCTCCAATTCAACCTGCAACTTCAACTGCTTTGAACCAGCAAATGCATGCCGCTTTGCTACAGCATTCTCTTCATGTTGGAAACTCAACTGTTGGACATAATAGTCAAATGGTTCGTCCAGATGCCAACTTTCAGCCTGGTCCCTCCATACCGTCATCTAATTCTCAGATATTGAGAAAAGGTGATAAATCTTCTAATATAACGCATTCAAACATGCCTTTGGGAAAAGAGAAAGCAAACATTGTTCATGATTCTTCAGAATCTTTTTCTCGCCCATCAAAGCTCATGAAATTGGATGAGGGAAGGAGTACAGCTATTTCTGCTGGTATATCAGATGTGCCAGTCACCGATGGACCATCTCATGCTCCTGGAAGAAGCTCATTGCCTGTACATGCAGCTCCTAAAGCAGAAGGGCAATATTCTGAGCAACAATCTTCTCAGCTTCCACCTGATGTGGAGTCTGTTTTGCTTCAACAAGTATTGAATTTGACACCAGAGCAATTGAGTTCCTTGCCACCAGAGCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATGCAGCCCTCATAA | 1620 | 0.463 | MATSQSQHRCVFVGNIPYDATEEQLVEICQDVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGMTTNVDPQKQVGGPAVHGEAVQHQPIGLHIAITAATVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTDMISELKGMATQNKDLARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQTSQSLMSEGQLGQPPLIQTLPGLPLHGQSKLQSGLTPYAQEGQVSTVLHNPLASNQLAAHPKPPVQPRIPLQQHPNNLVLPGTLSGQPNLLLPSVRPGLGSLSVRPPIQPATSTALNQQMHAALLQHSLHVGNSTVGHNSQMVRPDANFQPGPSIPSSNSQILRKGDKSSNITHSNMPLGKEKANIVHDSSESFSRPSKLMKLDEGRSTAISAGISDVPVTDGPSHAPGRSSLPVHAAPKAEGQYSEQQSSQLPPDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS* | 540 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu7g01902 | 539 | SMART | rrm1_1 | 10 | 83 | IPR000504 | GO:0003723 | |
| Lapu7g01902 | 539 | Pfam | Transcription termination and cleavage factor C-terminal | 501 | 533 | IPR026896 | GO:0031124 | |
| Lapu7g01902 | 539 | Gene3D | - | 1 | 117 | IPR012677 | - | |
| Lapu7g01902 | 539 | MobiDBLite | consensus disorder prediction | 512 | 539 | - | - | |
| Lapu7g01902 | 539 | MobiDBLite | consensus disorder prediction | 454 | 496 | - | - | |
| Lapu7g01902 | 539 | FunFam | Cleavage stimulating factor 64 | 2 | 118 | - | - | |
| Lapu7g01902 | 539 | CDD | RRM_CSTF2_RNA15_like | 9 | 85 | - | - | |
| Lapu7g01902 | 539 | FunFam | Related to Cleavage stimulation factor | 492 | 534 | - | - | |
| Lapu7g01902 | 539 | MobiDBLite | consensus disorder prediction | 84 | 113 | - | - | |
| Lapu7g01902 | 539 | PANTHER | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 | 3 | 535 | - | - | |
| Lapu7g01902 | 539 | Gene3D | - | 151 | 232 | - | - | |
| Lapu7g01902 | 539 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 105 | IPR035979 | GO:0003676 | |
| Lapu7g01902 | 539 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 9 | 87 | IPR000504 | GO:0003723 | |
| Lapu7g01902 | 539 | Pfam | Hinge domain of cleavage stimulation factor subunit 2 | 160 | 230 | IPR025742 | - | |
| Lapu7g01902 | 539 | FunFam | Cleavage stimulating factor 64 | 157 | 232 | - | - | |
| Lapu7g01902 | 539 | MobiDBLite | consensus disorder prediction | 373 | 438 | - | - | |
| Lapu7g01902 | 539 | MobiDBLite | consensus disorder prediction | 373 | 418 | - | - | |
| Lapu7g01902 | 539 | Gene3D | - | 492 | 538 | IPR038192 | - | |
| Lapu7g01902 | 539 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 11 | 81 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu7g01902 | Lapu-Chr7 | 35036754 | 35043926 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu7g01902 | 11 | 165 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 26.923 | 3.09e-07 | 51.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu7g01902 | K14407 | - | gmx:100806489 | 879.782 |