Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01880 ATGGATACGTCGAATCTACTCTTGTTCTTCTCTTTGGTCAGTCTGTGTGCTATGGCGGCTGCGAAGGTGGTGGTTATTGGGAACAATATCACTCTATCCTTCGATGATATTGAAGCTAATTTTGGTGAGTTTTATAGGCTATTTCTTCTCCTCCCAACTCCAACTGTCAAAGGTTCTGGAGAATATGGGGTCTTATATTTGGCGGAGCCACTTGATGCGTGTACAGAACTGACAAATAAACTTGAAAAACTTCCCAATGTGAGTTCACCTTTTGCTTTGGTGGTTAGAGGGGGATGTAGCTTTGAGGAAAAAGTCAGAAGGGCGCAAAAGGCTGGCTTCAATGCTGTAATTGTCTATGACAATGAAGAAGACGGTGTATTGGTTGCAATGGCAGGAAATTCTGCTGGTATAAGAATACACGCGGTATTTGTATCTAAAGCTTCGGGTGAAATACTAAAGAAATATGCTGGGTGGACTAATGTGGAAATTTGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTTATTTCCTTACTTGCAATGTCTGCGGTGCTGGCCACTTGTTTCTTTGTCCGCAGGCATCGCATAAGAAGAGAAAGGCCTCGGGCTTCTCTTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATATTTAGTGCTGTTTTGGAAGACAACTGCACATCAAGAACATGTGCTATATGCCTTGAAGACTATTGTGTTGGTGAGAAGATCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGTCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCCGTTTGCAAACGTGATGCAAGAACTGGCTTAACTGATCCACCACCTTCAGAATCCACACCCTTACTCTCATCAAGCCCAGCATCTATGGCGTCCTCTGTCTTGTCTTCTGTGAGATCATCAGTGGCTTCATCTTCAGCAATACAAATTGCCCGGACAGCTTCACAGACCACATCTGTTTCTCGTAACCACTCCATTGCCAGTACACCTTATGTTCATCCATCGCTTAGGTCCTCCTACCATCAATCCCCCTCCCTAAGCGTCAGCCGAAGCTCAGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCACACTTGAATTCACCACATTCCATGGGGTATCCTTCTTTGCCATCCCTTAACTCAAGGTACATGTCTCCATATATTCCAAGTCCAAGCAATGCTTCACTCAGCTATTTGGGTTCATCAAGTCATCAACAACATCCTCTCCGTTATAGTGAGTCAGCCGCAAGCTTCTCACCATTTACATCGACACACTCCCTTCCAGAATGTTAA 1365 0.4403 MDTSNLLLFFSLVSLCAMAAAKVVVIGNNITLSFDDIEANFGEFYRLFLLLPTPTVKGSGEYGVLYLAEPLDACTELTNKLEKLPNVSSPFALVVRGGCSFEEKVRRAQKAGFNAVIVYDNEEDGVLVAMAGNSAGIRIHAVFVSKASGEILKKYAGWTNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASLVREFHGMSSRLVKAMPSLIFSAVLEDNCTSRTCAICLEDYCVGEKIRILPCCHKFHAVCVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSSPASMASSVLSSVRSSVASSSAIQIARTASQTTSVSRNHSIASTPYVHPSLRSSYHQSPSLSVSRSSVDLRNASQRSLASHLNSPHSMGYPSLPSLNSRYMSPYIPSPSNASLSYLGSSSHQQHPLRYSESAASFSPFTSTHSLPEC* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01880 454 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 204 291 - -
Lapu7g01880 454 Pfam Ring finger domain 243 286 IPR001841 -
Lapu7g01880 454 SMART ring_2 244 285 IPR001841 -
Lapu7g01880 454 SUPERFAMILY RING/U-box 232 297 - -
Lapu7g01880 454 Gene3D - 23 165 - -
Lapu7g01880 454 Pfam PA domain 85 152 IPR003137 -
Lapu7g01880 454 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 21 166 - -
Lapu7g01880 454 ProSiteProfiles Zinc finger RING-type profile. 244 286 IPR001841 -
Lapu7g01880 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 291 IPR013083 -
Lapu7g01880 454 SUPERFAMILY PA domain 86 172 IPR046450 -
Lapu7g01880 454 CDD PA_C_RZF_like 19 173 IPR044744 -
Lapu7g01880 454 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 168 301 - -
Lapu7g01880 454 MobiDBLite consensus disorder prediction 357 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01880 Lapu-Chr7 34815070 34821004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01880 20 453 C3H Transcription Factor Family AT1G22670 46.136 1.13e-115 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01880 K15692 - gmx:100791248 708.368